public void possiblySyncPreferredTerm(String cls_name, String name, String value) {
if (name.compareTo(NCIEditTab.ALTLABEL) == 0) {
String tn = ComplexPropertyParser.getPtNciTermName(value);
if (tn != null) {
// need to mod preferred name and rdfs:label
OWLNamedClass cls = wrapper.getOWLNamedClass(cls_name);
String pn = wrapper.getPropertyValue(cls, NCIEditTab.PREFLABEL);
String rdl = wrapper.getPropertyValue(cls, "rdfs:label");
wrapper.modifyAnnotationProperty(cls_name, NCIEditTab.PREFLABEL, pn, tn);
wrapper.modifyAnnotationProperty(cls_name, "rdfs:label", rdl, tn);
}
} else if (name.compareTo(NCIEditTab.PREFLABEL) == 0) {
OWLNamedClass cls = wrapper.getOWLNamedClass(cls_name);
ArrayList<String> pvals = wrapper.getPropertyValues(cls, NCIEditTab.ALTLABEL);
for (String s : pvals) {
String tn = ComplexPropertyParser.getPtNciTermName(s);
if (tn != null) {
HashMap<String, String> hm = ComplexPropertyParser.parseXML(s);
String newfspt = ComplexPropertyParser.replaceFullSynValue(hm, "term-name", value);
wrapper.modifyAnnotationProperty(cls_name, NCIEditTab.ALTLABEL, s, newfspt);
}
}
String rdl = wrapper.getPropertyValue(cls, "rdfs:label");
wrapper.modifyAnnotationProperty(cls_name, "rdfs:label", rdl, value);
}
}
public boolean processTask(int taskId) {
String s = (String) data_vec.elementAt(taskId);
super.print("processing: " + s);
try {
Vector<String> w = getTokenStr(s, 9);
String name = (String) w.elementAt(0);
if (super.checkNoErrors(w, taskId)) {
// ok
} else {
return false;
}
String edit = (String) w.elementAt(1);
String attribute = (String) w.elementAt(2);
String attributeName = (String) w.elementAt(3);
String attributeValue = (String) w.elementAt(4);
String newAttributeValue = (String) w.elementAt(5);
owlModel.beginTransaction("BatchEdit. Processing " + s);
// this should be false???
boolean retval = false;
if (edit.compareToIgnoreCase("new") == 0) {
if (attribute.compareToIgnoreCase("property") == 0) {
if (attributeName.compareToIgnoreCase(NCIEditTab.ALTLABEL) == 0) {
OWLNamedClass hostClass = wrapper.getOWLNamedClass(name);
retval =
wrapper.addAnnotationProperty(
hostClass,
NCIEditTab.ALTLABEL,
owlModel.createRDFSLiteral(
attributeValue, owlModel.getSystemFrames().getXmlLiteralType()));
} else {
retval = wrapper.addAnnotationProperty(name, attributeName, attributeValue);
}
} else if (attribute.compareToIgnoreCase("parent") == 0) {
OWLNamedClass hostClass = wrapper.getOWLNamedClass(name);
OWLNamedClass targetClass = wrapper.getOWLNamedClass(attributeName);
retval = wrapper.addDirectSuperclass(hostClass, targetClass);
} else if (attribute.compareToIgnoreCase("association") == 0) {
OWLNamedClass hostClass = wrapper.getOWLNamedClass(name);
retval = wrapper.addObjectProperty(hostClass, attributeName, attributeValue);
} else if (attribute.compareToIgnoreCase("role") == 0) {
int pos = attributeValue.indexOf('|');
String modifier = attributeValue.substring(0, pos);
String value = attributeValue.substring(pos + 1);
retval = wrapper.addRestriction(name, attributeName, value, modifier);
}
} else if (edit.compareToIgnoreCase("delete") == 0) {
if (attribute.compareToIgnoreCase("property") == 0) {
retval = wrapper.removeAnnotationProperty(name, attributeName, attributeValue);
} else if (attribute.compareToIgnoreCase("parent") == 0) {
OWLNamedClass hostClass = wrapper.getOWLNamedClass(name);
OWLNamedClass targetClass = wrapper.getOWLNamedClass(attributeName);
RDFSClass definition = hostClass.getDefinition();
if (definition == null) {
retval = wrapper.removeDirectSuperclass(hostClass, targetClass);
} else {
retval = wrapper.removeEquivalentDefinitionNew(hostClass, targetClass);
}
} else if (attribute.compareToIgnoreCase("association") == 0) {
OWLNamedClass hostClass = wrapper.getOWLNamedClass(name);
retval = wrapper.removeObjectProperty(hostClass, attributeName, attributeValue);
} else if (attribute.compareToIgnoreCase("role") == 0) {
int pos = attributeValue.indexOf('|');
String modifier = attributeValue.substring(0, pos);
String value = attributeValue.substring(pos + 1);
retval = wrapper.removeRestriction(name, attributeName, value, modifier);
}
} else if (edit.compareToIgnoreCase("edit") == 0) {
if (attribute.compareToIgnoreCase("property") == 0) {
retval =
wrapper.modifyAnnotationProperty(
name, attributeName, attributeValue, newAttributeValue);
possiblySyncPreferredTerm(name, attributeName, newAttributeValue);
} else if (attribute.compareToIgnoreCase("role") == 0) {
int pos = attributeValue.indexOf('|');
String modifier = attributeValue.substring(0, pos);
String value = attributeValue.substring(pos + 1);
pos = newAttributeValue.indexOf('|');
String newmodifier = newAttributeValue.substring(0, pos);
String newvalue = newAttributeValue.substring(pos + 1);
retval =
wrapper.modifyRestriction(
name, attributeName, value, modifier, newvalue, newmodifier);
} else if (attribute.compareToIgnoreCase("association") == 0) {
OWLNamedClass hostClass = wrapper.getOWLNamedClass(name);
retval = wrapper.removeObjectProperty(hostClass, attributeName, attributeValue);
retval = wrapper.addObjectProperty(hostClass, attributeName, newAttributeValue);
}
}
// to be implemented
/*
* else if (edit.compareToIgnoreCase("delete-all") == 0) { }
*/
if (retval) {
tab.recordHistory(NCIEditTab.EVSHistoryAction.MODIFY, wrapper.getOWLNamedClass(name), "");
super.print("\t Done.");
} else {
super.print("\t Failed.");
}
owlModel.commitTransaction();
} catch (Exception ex) {
owlModel.rollbackTransaction();
print("Server Error occurred:");
ex.printStackTrace();
super.print(" Failed.");
data_vec.remove(taskId);
this.setMax(max - 1);
return false;
}
return true;
}