public AutomationPage() {
bModel = new BratAnnotatorModel();
bModel.setMode(Mode.AUTOMATION);
LinkedList<CurationUserSegmentForAnnotationDocument> sentences =
new LinkedList<CurationUserSegmentForAnnotationDocument>();
CurationUserSegmentForAnnotationDocument curationUserSegmentForAnnotationDocument =
new CurationUserSegmentForAnnotationDocument();
if (bModel.getDocument() != null) {
curationUserSegmentForAnnotationDocument.setAnnotationSelectionByUsernameAndAddress(
annotationSelectionByUsernameAndAddress);
curationUserSegmentForAnnotationDocument.setBratAnnotatorModel(bModel);
sentences.add(curationUserSegmentForAnnotationDocument);
}
automateView =
new SuggestionViewPanel(
"automateView",
new Model<LinkedList<CurationUserSegmentForAnnotationDocument>>(sentences)) {
private static final long serialVersionUID = 2583509126979792202L;
@Override
public void onChange(AjaxRequestTarget aTarget) {
try {
// update begin/end of the curationsegment based on bratAnnotatorModel changes
// (like sentence change in auto-scroll mode,....
aTarget.addChildren(getPage(), FeedbackPanel.class);
curationContainer.setBratAnnotatorModel(bModel);
setCurationSegmentBeginEnd();
CuratorUtil.updatePanel(
aTarget,
this,
curationContainer,
mergeVisualizer,
repository,
annotationSelectionByUsernameAndAddress,
curationSegment,
annotationService,
userRepository);
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
mergeVisualizer.bratRenderLater(aTarget);
aTarget.add(numberOfPages);
update(aTarget);
}
};
automateView.setOutputMarkupId(true);
add(automateView);
annotationDetailEditorPanel =
new AnnotationDetailEditorPanel(
"annotationDetailEditorPanel", new Model<BratAnnotatorModel>(bModel)) {
private static final long serialVersionUID = 2857345299480098279L;
@Override
protected void onChange(AjaxRequestTarget aTarget, BratAnnotatorModel aBModel) {
aTarget.addChildren(getPage(), FeedbackPanel.class);
try {
mergeVisualizer.bratRender(aTarget, getCas(aBModel));
} catch (UIMAException | ClassNotFoundException | IOException e) {
LOG.info("Error reading CAS " + e.getMessage());
error("Error reading CAS " + e.getMessage());
return;
}
mergeVisualizer.bratRenderHighlight(aTarget, aBModel.getSelection().getAnnotation());
mergeVisualizer.onChange(aTarget, aBModel);
mergeVisualizer.onAnnotate(
aTarget,
aBModel,
aBModel.getSelection().getBegin(),
aBModel.getSelection().getEnd());
if (!aBModel.getSelection().isAnnotate()) {
mergeVisualizer.onDelete(
aTarget,
aBModel,
aBModel.getSelection().getBegin(),
aBModel.getSelection().getEnd());
}
}
};
annotationDetailEditorPanel.setOutputMarkupId(true);
add(annotationDetailEditorPanel);
mergeVisualizer =
new BratAnnotator(
"mergeView", new Model<BratAnnotatorModel>(bModel), annotationDetailEditorPanel) {
private static final long serialVersionUID = 7279648231521710155L;
@Override
public void onChange(AjaxRequestTarget aTarget, BratAnnotatorModel aBratAnnotatorModel) {
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
// info(bratAnnotatorModel.getMessage());
aTarget.addChildren(getPage(), FeedbackPanel.class);
bModel = aBratAnnotatorModel;
SuggestionBuilder builder =
new SuggestionBuilder(repository, annotationService, userRepository);
curationContainer = builder.buildCurationContainer(bModel);
setCurationSegmentBeginEnd();
curationContainer.setBratAnnotatorModel(bModel);
CuratorUtil.updatePanel(
aTarget,
automateView,
curationContainer,
this,
repository,
annotationSelectionByUsernameAndAddress,
curationSegment,
annotationService,
userRepository);
aTarget.add(automateView);
aTarget.add(numberOfPages);
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
update(aTarget);
}
@Override
public void onAnnotate(
AjaxRequestTarget aTarget,
BratAnnotatorModel aBratAnnotatorModel,
int aStart,
int aEnd) {
MiraTemplate template;
Set<AnnotationFeature> features = bModel.getRememberedSpanFeatures().keySet();
AnnotationFeature autoFeature = null;
for (AnnotationFeature feature : features) {
autoFeature = feature;
break;
}
try {
template = automationService.getMiraTemplate(autoFeature);
if (!template.isAnnotateAndPredict()) {
return;
}
/*
* Tag tag = annotationService.getTag(bratAnnotatorModel
* .getRememberedSpanFeatures().get(autoFeature), autoFeature.getTagset());
*/
AutomationUtil.repeateAnnotation(
bModel,
repository,
userRepository,
annotationService,
automationService,
aStart,
aEnd,
autoFeature);
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
} catch (NoResultException e) { // no automation layer is configured yet.
template = null;
return;
}
update(aTarget);
}
@Override
public void onDelete(
AjaxRequestTarget aTarget,
BratAnnotatorModel aBratAnnotatorModel,
int aStart,
int aEnd) {
MiraTemplate template;
Set<AnnotationFeature> features = bModel.getRememberedSpanFeatures().keySet();
AnnotationFeature autoFeature = null;
for (AnnotationFeature feature : features) {
autoFeature = feature;
break;
}
if (autoFeature == null) {
return;
}
try {
template = automationService.getMiraTemplate(autoFeature);
if (!template.isAnnotateAndPredict()) {
return;
}
/*
* Tag tag = annotationService.getTag(bratAnnotatorModel
* .getRememberedSpanFeatures().get(autoFeature), autoFeature.getTagset());
*/
AutomationUtil.deleteAnnotation(
bModel,
repository,
annotationService,
automationService,
userRepository,
aStart,
aEnd,
autoFeature);
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
} catch (NoResultException e) { // no automation layer is configured yet.
template = null;
return;
}
update(aTarget);
}
};
// reset sentenceAddress and lastSentenceAddress to the orginal once
mergeVisualizer.setOutputMarkupId(true);
add(mergeVisualizer);
curationContainer = new CurationContainer();
curationContainer.setBratAnnotatorModel(bModel);
add(
documentNamePanel =
new DocumentNamePanel("documentNamePanel", new Model<BratAnnotatorModel>(bModel)));
add(
numberOfPages =
(Label)
new Label(
"numberOfPages",
new LoadableDetachableModel<String>() {
private static final long serialVersionUID = 891566759811286173L;
@Override
protected String load() {
if (bModel.getDocument() != null) {
JCas mergeJCas = null;
try {
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
totalNumberOfSentence = getNumberOfPages(mergeJCas);
// If only one page, start displaying from sentence 1
/*
* if (totalNumberOfSentence == 1) {
* bratAnnotatorModel.setSentenceAddress(bratAnnotatorModel
* .getFirstSentenceAddress()); }
*/
int address =
getAddr(
selectSentenceAt(
mergeJCas,
bModel.getSentenceBeginOffset(),
bModel.getSentenceEndOffset()));
sentenceNumber = getFirstSentenceNumber(mergeJCas, address);
int firstSentenceNumber = sentenceNumber + 1;
int lastSentenceNumber;
if (firstSentenceNumber
+ bModel.getPreferences().getWindowSize()
- 1
< totalNumberOfSentence) {
lastSentenceNumber =
firstSentenceNumber
+ bModel.getPreferences().getWindowSize()
- 1;
} else {
lastSentenceNumber = totalNumberOfSentence;
}
return "showing "
+ firstSentenceNumber
+ "-"
+ lastSentenceNumber
+ " of "
+ totalNumberOfSentence
+ " sentences";
} catch (UIMAException e) {
return "";
} catch (DataRetrievalFailureException e) {
return "";
} catch (ClassNotFoundException e) {
return "";
} catch (FileNotFoundException e) {
return "";
} catch (IOException e) {
return "";
}
} else {
return ""; // no document yet selected
}
}
})
.setOutputMarkupId(true));
final ModalWindow openDocumentsModal;
add(openDocumentsModal = new ModalWindow("openDocumentsModal"));
openDocumentsModal.setOutputMarkupId(true);
openDocumentsModal.setInitialWidth(500);
openDocumentsModal.setInitialHeight(300);
openDocumentsModal.setResizable(true);
openDocumentsModal.setWidthUnit("px");
openDocumentsModal.setHeightUnit("px");
openDocumentsModal.setTitle("Open document");
add(
new AjaxLink<Void>("showOpenDocumentModal") {
private static final long serialVersionUID = 7496156015186497496L;
@Override
public void onClick(AjaxRequestTarget aTarget) {
openDocumentsModal.setContent(
new OpenModalWindowPanel(
openDocumentsModal.getContentId(),
bModel,
openDocumentsModal,
Mode.AUTOMATION));
openDocumentsModal.setWindowClosedCallback(
new ModalWindow.WindowClosedCallback() {
private static final long serialVersionUID = -1746088901018629567L;
@Override
public void onClose(AjaxRequestTarget target) {
if (bModel.getDocument() == null) {
setResponsePage(WelcomePage.class);
return;
}
try {
target.addChildren(getPage(), FeedbackPanel.class);
bModel.setDocument(bModel.getDocument());
bModel.setProject(bModel.getProject());
String username =
SecurityContextHolder.getContext().getAuthentication().getName();
repository.upgradeCasAndSave(bModel.getDocument(), Mode.AUTOMATION, username);
loadDocumentAction();
setCurationSegmentBeginEnd();
update(target);
} catch (UIMAException e) {
target.addChildren(getPage(), FeedbackPanel.class);
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
target.addChildren(getPage(), FeedbackPanel.class);
error(e.getMessage());
} catch (IOException e) {
target.addChildren(getPage(), FeedbackPanel.class);
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
finish.setModelObject(bModel);
target.add(finish.setOutputMarkupId(true));
target.appendJavaScript(
"Wicket.Window.unloadConfirmation=false;window.location.reload()");
target.add(documentNamePanel.setOutputMarkupId(true));
target.add(numberOfPages);
}
});
openDocumentsModal.show(aTarget);
}
});
add(
new AnnotationLayersModalPanel(
"annotationLayersModalPanel", new Model<BratAnnotatorModel>(bModel)) {
private static final long serialVersionUID = -4657965743173979437L;
@Override
protected void onChange(AjaxRequestTarget aTarget) {
curationContainer.setBratAnnotatorModel(bModel);
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
setCurationSegmentBeginEnd();
} catch (UIMAException e) {
error(ExceptionUtils.getRootCauseMessage(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
}
update(aTarget);
// mergeVisualizer.reloadContent(aTarget);
aTarget.appendJavaScript(
"Wicket.Window.unloadConfirmation = false;window.location.reload()");
}
});
add(new ExportModalPanel("exportModalPanel", new Model<BratAnnotatorModel>(bModel)));
gotoPageTextField =
(NumberTextField<Integer>)
new NumberTextField<Integer>("gotoPageText", new Model<Integer>(0));
Form<Void> gotoPageTextFieldForm = new Form<Void>("gotoPageTextFieldForm");
gotoPageTextFieldForm.add(
new AjaxFormSubmitBehavior(gotoPageTextFieldForm, "onsubmit") {
private static final long serialVersionUID = -4549805321484461545L;
@Override
protected void onSubmit(AjaxRequestTarget aTarget) {
if (gotoPageAddress == 0) {
aTarget.appendJavaScript("alert('The sentence number entered is not valid')");
return;
}
JCas mergeJCas = null;
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
if (bModel.getSentenceAddress() != gotoPageAddress) {
ubdateSentenceNumber(mergeJCas, gotoPageAddress);
SuggestionBuilder builder =
new SuggestionBuilder(repository, annotationService, userRepository);
curationContainer = builder.buildCurationContainer(bModel);
setCurationSegmentBeginEnd();
curationContainer.setBratAnnotatorModel(bModel);
update(aTarget);
mergeVisualizer.bratRenderLater(aTarget);
}
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
}
});
gotoPageTextField.setType(Integer.class);
gotoPageTextField.setMinimum(1);
gotoPageTextField.setDefaultModelObject(1);
add(gotoPageTextFieldForm.add(gotoPageTextField));
gotoPageTextField.add(
new AjaxFormComponentUpdatingBehavior("onchange") {
private static final long serialVersionUID = -3853194405966729661L;
@Override
protected void onUpdate(AjaxRequestTarget target) {
JCas mergeJCas = null;
try {
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
gotoPageAddress = getSentenceAddress(mergeJCas, gotoPageTextField.getModelObject());
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(ExceptionUtils.getRootCause(e));
} catch (IOException e) {
error(e.getMessage());
}
}
});
add(
new AjaxLink<Void>("gotoPageLink") {
private static final long serialVersionUID = 7496156015186497496L;
@Override
public void onClick(AjaxRequestTarget aTarget) {
if (gotoPageAddress == 0) {
aTarget.appendJavaScript("alert('The sentence number entered is not valid')");
return;
}
if (bModel.getDocument() == null) {
aTarget.appendJavaScript("alert('Please open a document first!')");
return;
}
JCas mergeJCas = null;
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
if (bModel.getSentenceAddress() != gotoPageAddress) {
ubdateSentenceNumber(mergeJCas, gotoPageAddress);
SuggestionBuilder builder =
new SuggestionBuilder(repository, annotationService, userRepository);
curationContainer = builder.buildCurationContainer(bModel);
setCurationSegmentBeginEnd();
curationContainer.setBratAnnotatorModel(bModel);
update(aTarget);
mergeVisualizer.bratRenderLater(aTarget);
}
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
}
});
finish =
new FinishImage(
"finishImage",
new LoadableDetachableModel<BratAnnotatorModel>() {
private static final long serialVersionUID = -2737326878793568454L;
@Override
protected BratAnnotatorModel load() {
return bModel;
}
});
add(
new FinishLink("showYesNoModalPanel", new Model<BratAnnotatorModel>(bModel), finish) {
private static final long serialVersionUID = -4657965743173979437L;
});
// Show the previous document, if exist
add(
new AjaxLink<Void>("showPreviousDocument") {
private static final long serialVersionUID = 7496156015186497496L;
/**
* Get the current beginning sentence address and add on it the size of the display window
*/
@Override
public void onClick(AjaxRequestTarget target) {
target.addChildren(getPage(), FeedbackPanel.class);
// List of all Source Documents in the project
List<SourceDocument> listOfSourceDocuements =
repository.listSourceDocuments(bModel.getProject());
String username = SecurityContextHolder.getContext().getAuthentication().getName();
User user = userRepository.get(username);
List<SourceDocument> sourceDocumentsinIgnorState = new ArrayList<SourceDocument>();
for (SourceDocument sourceDocument : listOfSourceDocuements) {
if (repository.existsAnnotationDocument(sourceDocument, user)
&& repository
.getAnnotationDocument(sourceDocument, user)
.getState()
.equals(AnnotationDocumentState.IGNORE)) {
sourceDocumentsinIgnorState.add(sourceDocument);
} else if (sourceDocument.isTrainingDocument()) {
sourceDocumentsinIgnorState.add(sourceDocument);
}
}
listOfSourceDocuements.removeAll(sourceDocumentsinIgnorState);
// Index of the current source document in the list
int currentDocumentIndex = listOfSourceDocuements.indexOf(bModel.getDocument());
// If the first the document
if (currentDocumentIndex == 0) {
target.appendJavaScript("alert('This is the first document!')");
} else {
bModel.setDocumentName(
listOfSourceDocuements.get(currentDocumentIndex - 1).getName());
bModel.setDocument(listOfSourceDocuements.get(currentDocumentIndex - 1));
try {
repository.upgradeCasAndSave(
bModel.getDocument(), Mode.AUTOMATION, bModel.getUser().getUsername());
loadDocumentAction();
setCurationSegmentBeginEnd();
update(target);
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(ExceptionUtils.getRootCause(e));
} catch (IOException e) {
error(ExceptionUtils.getRootCause(e));
} catch (BratAnnotationException e) {
target.addChildren(getPage(), FeedbackPanel.class);
error(e.getMessage());
}
finish.setModelObject(bModel);
target.add(finish.setOutputMarkupId(true));
target.add(numberOfPages);
target.add(documentNamePanel);
mergeVisualizer.bratRenderLater(target);
}
}
}.add(new InputBehavior(new KeyType[] {KeyType.Shift, KeyType.Page_up}, EventType.click)));
// Show the next document if exist
add(
new AjaxLink<Void>("showNextDocument") {
private static final long serialVersionUID = 7496156015186497496L;
/**
* Get the current beginning sentence address and add on it the size of the display window
*/
@Override
public void onClick(AjaxRequestTarget target) {
target.addChildren(getPage(), FeedbackPanel.class);
// List of all Source Documents in the project
List<SourceDocument> listOfSourceDocuements =
repository.listSourceDocuments(bModel.getProject());
String username = SecurityContextHolder.getContext().getAuthentication().getName();
User user = userRepository.get(username);
List<SourceDocument> sourceDocumentsinIgnorState = new ArrayList<SourceDocument>();
for (SourceDocument sourceDocument : listOfSourceDocuements) {
if (repository.existsAnnotationDocument(sourceDocument, user)
&& repository
.getAnnotationDocument(sourceDocument, user)
.getState()
.equals(AnnotationDocumentState.IGNORE)) {
sourceDocumentsinIgnorState.add(sourceDocument);
} else if (sourceDocument.isTrainingDocument()) {
sourceDocumentsinIgnorState.add(sourceDocument);
}
}
listOfSourceDocuements.removeAll(sourceDocumentsinIgnorState);
// Index of the current source document in the list
int currentDocumentIndex = listOfSourceDocuements.indexOf(bModel.getDocument());
// If the first document
if (currentDocumentIndex == listOfSourceDocuements.size() - 1) {
target.appendJavaScript("alert('This is the last document!')");
return;
}
bModel.setDocumentName(listOfSourceDocuements.get(currentDocumentIndex + 1).getName());
bModel.setDocument(listOfSourceDocuements.get(currentDocumentIndex + 1));
try {
repository.upgradeCasAndSave(
bModel.getDocument(), Mode.AUTOMATION, bModel.getUser().getUsername());
loadDocumentAction();
setCurationSegmentBeginEnd();
update(target);
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(ExceptionUtils.getRootCause(e));
} catch (IOException e) {
error(ExceptionUtils.getRootCause(e));
} catch (BratAnnotationException e) {
target.addChildren(getPage(), FeedbackPanel.class);
error(e.getMessage());
}
finish.setModelObject(bModel);
target.add(finish.setOutputMarkupId(true));
target.add(numberOfPages);
target.add(documentNamePanel);
mergeVisualizer.bratRenderLater(target);
}
}.add(
new InputBehavior(new KeyType[] {KeyType.Shift, KeyType.Page_down}, EventType.click)));
// Show the next page of this document
add(
new AjaxLink<Void>("showNext") {
private static final long serialVersionUID = 7496156015186497496L;
/**
* Get the current beginning sentence address and add on it the size of the display window
*/
@Override
public void onClick(AjaxRequestTarget aTarget) {
if (bModel.getDocument() != null) {
JCas mergeJCas = null;
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
int address =
getAddr(
selectSentenceAt(
mergeJCas,
bModel.getSentenceBeginOffset(),
bModel.getSentenceEndOffset()));
int nextSentenceAddress =
getNextPageFirstSentenceAddress(
mergeJCas, address, bModel.getPreferences().getWindowSize());
if (address != nextSentenceAddress) {
ubdateSentenceNumber(mergeJCas, nextSentenceAddress);
SuggestionBuilder builder =
new SuggestionBuilder(repository, annotationService, userRepository);
curationContainer = builder.buildCurationContainer(bModel);
setCurationSegmentBeginEnd();
curationContainer.setBratAnnotatorModel(bModel);
update(aTarget);
mergeVisualizer.bratRenderLater(aTarget);
} else {
aTarget.appendJavaScript("alert('This is last page!')");
}
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
} else {
aTarget.appendJavaScript("alert('Please open a document first!')");
}
}
}.add(new InputBehavior(new KeyType[] {KeyType.Page_down}, EventType.click)));
// SHow the previous page of this document
add(
new AjaxLink<Void>("showPrevious") {
private static final long serialVersionUID = 7496156015186497496L;
@Override
public void onClick(AjaxRequestTarget aTarget) {
if (bModel.getDocument() != null) {
JCas mergeJCas = null;
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
int previousSentenceAddress =
BratAjaxCasUtil.getPreviousDisplayWindowSentenceBeginAddress(
mergeJCas,
bModel.getSentenceAddress(),
bModel.getPreferences().getWindowSize());
if (bModel.getSentenceAddress() != previousSentenceAddress) {
ubdateSentenceNumber(mergeJCas, previousSentenceAddress);
SuggestionBuilder builder =
new SuggestionBuilder(repository, annotationService, userRepository);
curationContainer = builder.buildCurationContainer(bModel);
setCurationSegmentBeginEnd();
curationContainer.setBratAnnotatorModel(bModel);
update(aTarget);
mergeVisualizer.bratRenderLater(aTarget);
} else {
aTarget.appendJavaScript("alert('This is First Page!')");
}
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {;
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
} else {
aTarget.appendJavaScript("alert('Please open a document first!')");
}
}
}.add(new InputBehavior(new KeyType[] {KeyType.Page_up}, EventType.click)));
add(
new AjaxLink<Void>("showFirst") {
private static final long serialVersionUID = 7496156015186497496L;
@Override
public void onClick(AjaxRequestTarget aTarget) {
if (bModel.getDocument() != null) {
JCas mergeJCas = null;
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
int address =
getAddr(
selectSentenceAt(
mergeJCas,
bModel.getSentenceBeginOffset(),
bModel.getSentenceEndOffset()));
int firstAddress = getFirstSentenceAddress(mergeJCas);
if (firstAddress != address) {
ubdateSentenceNumber(mergeJCas, firstAddress);
SuggestionBuilder builder =
new SuggestionBuilder(repository, annotationService, userRepository);
curationContainer = builder.buildCurationContainer(bModel);
setCurationSegmentBeginEnd();
curationContainer.setBratAnnotatorModel(bModel);
update(aTarget);
mergeVisualizer.bratRenderLater(aTarget);
} else {
aTarget.appendJavaScript("alert('This is first page!')");
}
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
} else {
aTarget.appendJavaScript("alert('Please open a document first!')");
}
}
}.add(new InputBehavior(new KeyType[] {KeyType.Home}, EventType.click)));
add(
new AjaxLink<Void>("showLast") {
private static final long serialVersionUID = 7496156015186497496L;
@Override
public void onClick(AjaxRequestTarget aTarget) {
if (bModel.getDocument() != null) {
JCas mergeJCas = null;
try {
aTarget.addChildren(getPage(), FeedbackPanel.class);
mergeJCas = repository.readCorrectionCas(bModel.getDocument());
int lastDisplayWindowBeginingSentenceAddress =
BratAjaxCasUtil.getLastDisplayWindowFirstSentenceAddress(
mergeJCas, bModel.getPreferences().getWindowSize());
if (lastDisplayWindowBeginingSentenceAddress != bModel.getSentenceAddress()) {
ubdateSentenceNumber(mergeJCas, lastDisplayWindowBeginingSentenceAddress);
SuggestionBuilder builder =
new SuggestionBuilder(repository, annotationService, userRepository);
curationContainer = builder.buildCurationContainer(bModel);
setCurationSegmentBeginEnd();
curationContainer.setBratAnnotatorModel(bModel);
update(aTarget);
mergeVisualizer.bratRenderLater(aTarget);
} else {
aTarget.appendJavaScript("alert('This is last Page!')");
}
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
} else {
aTarget.appendJavaScript("alert('Please open a document first!')");
}
}
}.add(new InputBehavior(new KeyType[] {KeyType.End}, EventType.click)));
add(new GuidelineModalPanel("guidelineModalPanel", new Model<BratAnnotatorModel>(bModel)));
}
public CurationPanel(String id, final IModel<CurationContainer> cCModel) {
super(id, cCModel);
WebMarkupContainer sidebarCell =
new WebMarkupContainer("sidebarCell") {
private static final long serialVersionUID = 1L;
@Override
protected void onComponentTag(ComponentTag aTag) {
super.onComponentTag(aTag);
aTag.put("width", bModel.getPreferences().getSidebarSize() + "%");
}
};
add(sidebarCell);
WebMarkupContainer annotationViewCell =
new WebMarkupContainer("annotationViewCell") {
private static final long serialVersionUID = 1L;
@Override
protected void onComponentTag(ComponentTag aTag) {
super.onComponentTag(aTag);
aTag.put("width", (100 - bModel.getPreferences().getSidebarSize()) + "%");
}
};
add(annotationViewCell);
// add container for list of sentences panel
sentencesListView = new WebMarkupContainer("sentencesListView");
sentencesListView.setOutputMarkupId(true);
add(sentencesListView);
// add container for the list of sentences where annotations exists crossing multiple
// sentences
// outside of the current page
corssSentAnnoView = new WebMarkupContainer("corssSentAnnoView");
corssSentAnnoView.setOutputMarkupId(true);
annotationViewCell.add(corssSentAnnoView);
bModel = getModelObject().getBratAnnotatorModel();
LinkedList<CurationUserSegmentForAnnotationDocument> sentences =
new LinkedList<CurationUserSegmentForAnnotationDocument>();
CurationUserSegmentForAnnotationDocument curationUserSegmentForAnnotationDocument =
new CurationUserSegmentForAnnotationDocument();
if (bModel != null) {
curationUserSegmentForAnnotationDocument.setAnnotationSelectionByUsernameAndAddress(
annotationSelectionByUsernameAndAddress);
curationUserSegmentForAnnotationDocument.setBratAnnotatorModel(bModel);
sentences.add(curationUserSegmentForAnnotationDocument);
}
// update source list model only first time.
sourceListModel =
sourceListModel == null ? getModelObject().getCurationViews() : sourceListModel;
suggestionViewPanel =
new SuggestionViewPanel(
"suggestionViewPanel",
new Model<LinkedList<CurationUserSegmentForAnnotationDocument>>(sentences)) {
private static final long serialVersionUID = 2583509126979792202L;
CurationContainer curationContainer = cCModel.getObject();
@Override
public void onChange(AjaxRequestTarget aTarget) {
try {
// update begin/end of the curationsegment based on bratAnnotatorModel changes
// (like sentence change in auto-scroll mode,....
aTarget.addChildren(getPage(), FeedbackPanel.class);
updatePanel(aTarget, curationContainer);
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
}
};
suggestionViewPanel.setOutputMarkupId(true);
annotationViewCell.add(suggestionViewPanel);
editor =
new AnnotationDetailEditorPanel(
"annotationDetailEditorPanel", new Model<BratAnnotatorModel>(bModel)) {
private static final long serialVersionUID = 2857345299480098279L;
@Override
protected void onChange(AjaxRequestTarget aTarget, BratAnnotatorModel aBModel) {
aTarget.addChildren(getPage(), FeedbackPanel.class);
annotate = true;
annotator.onChange(aTarget, aBModel);
}
@Override
protected void onAutoForward(AjaxRequestTarget aTarget, BratAnnotatorModel aBModel) {
try {
annotator.autoForward(aTarget, getCas(aBModel));
} catch (UIMAException
| ClassNotFoundException
| IOException
| BratAnnotationException e) {
LOG.info("Error reading CAS " + e.getMessage());
error("Error reading CAS " + e.getMessage());
return;
}
}
@Override
protected void onConfigure() {
super.onConfigure();
setEnabled(
bModel.getDocument() != null
&& !repository
.getSourceDocument(
bModel.getDocument().getProject(), bModel.getDocument().getName())
.getState()
.equals(SourceDocumentState.CURATION_FINISHED));
}
};
editor.setOutputMarkupId(true);
sidebarCell.add(editor);
annotator =
new BratAnnotator("mergeView", new Model<BratAnnotatorModel>(bModel), editor) {
private static final long serialVersionUID = 7279648231521710155L;
@Override
public void onChange(AjaxRequestTarget aTarget, BratAnnotatorModel bratAnnotatorModel) {
aTarget.addChildren(getPage(), FeedbackPanel.class);
try {
updatePanel(aTarget, cCModel.getObject());
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
}
};
// reset sentenceAddress and lastSentenceAddress to the orginal once
annotator.setOutputMarkupId(true);
annotationViewCell.add(annotator);
LoadableDetachableModel sentenceDiffModel =
new LoadableDetachableModel() {
@Override
protected Object load() {
int fSN = bModel.getFSN();
int lSN = bModel.getLSN();
List<String> crossSentAnnos = new ArrayList<>();
if (SuggestionBuilder.crossSentenceLists != null) {
for (int sn : SuggestionBuilder.crossSentenceLists.keySet()) {
if (sn >= fSN && sn <= lSN) {
List<Integer> cr = new ArrayList<>();
for (int c : SuggestionBuilder.crossSentenceLists.get(sn)) {
if (c < fSN || c > lSN) {
cr.add(c);
}
}
if (!cr.isEmpty()) {
crossSentAnnos.add(sn + "-->" + cr);
}
}
}
}
return crossSentAnnos;
}
};
crossSentAnnoList =
new ListView<String>("crossSentAnnoList", sentenceDiffModel) {
private static final long serialVersionUID = 8539162089561432091L;
@Override
protected void populateItem(ListItem<String> item) {
String crossSentAnno = item.getModelObject();
// ajax call when clicking on a sentence on the left side
final AbstractDefaultAjaxBehavior click =
new AbstractDefaultAjaxBehavior() {
private static final long serialVersionUID = 5803814168152098822L;
@Override
protected void respond(AjaxRequestTarget aTarget) {
// Expand curation view
}
};
// add subcomponents to the component
item.add(click);
Label crossSentAnnoItem = new AjaxLabel("crossAnnoSent", crossSentAnno, click);
item.add(crossSentAnnoItem);
}
};
crossSentAnnoList.setOutputMarkupId(true);
corssSentAnnoView.add(crossSentAnnoList);
LoadableDetachableModel sentencesListModel =
new LoadableDetachableModel() {
@Override
protected Object load() {
return getModelObject().getCurationViews();
}
};
sentenceList =
new ListView<SourceListView>("sentencesList", sentencesListModel) {
private static final long serialVersionUID = 8539162089561432091L;
@Override
protected void populateItem(ListItem<SourceListView> item) {
final SourceListView curationViewItem = item.getModelObject();
// ajax call when clicking on a sentence on the left side
final AbstractDefaultAjaxBehavior click =
new AbstractDefaultAjaxBehavior() {
private static final long serialVersionUID = 5803814168152098822L;
@Override
protected void respond(AjaxRequestTarget aTarget) {
curationView = curationViewItem;
fSn = 0;
try {
JCas jCas = repository.readCurationCas(bModel.getDocument());
updateCurationView(cCModel.getObject(), curationViewItem, aTarget, jCas);
updatePanel(aTarget, cCModel.getObject());
bModel.setSentenceNumber(curationViewItem.getSentenceNumber());
} catch (UIMAException e) {
error(ExceptionUtils.getRootCause(e));
} catch (ClassNotFoundException e) {
error(e.getMessage());
} catch (IOException e) {
error(e.getMessage());
} catch (BratAnnotationException e) {
error(e.getMessage());
}
}
};
// add subcomponents to the component
item.add(click);
String cC = curationViewItem.getSentenceState().getValue();
// mark current sentence in orange if disagree
if (curationViewItem.getSentenceNumber() == bModel.getSentenceNumber()) {
if (cC != null) {
item.add(AttributeModifier.append("class", "current-disagree"));
}
} else if (cC != null) {
// disagree in range
if (curationViewItem.getSentenceNumber() >= fSn
&& curationViewItem.getSentenceNumber() <= lSn) {
item.add(AttributeModifier.append("class", "range-disagree"));
} else {
item.add(AttributeModifier.append("class", "disagree"));
}
}
// agree and in range
else if (curationViewItem.getSentenceNumber() >= fSn
&& curationViewItem.getSentenceNumber() <= lSn) {
item.add(AttributeModifier.append("class", "range-agree"));
} else {
item.add(AttributeModifier.append("class", "agree"));
}
Label sentenceNumber =
new AjaxLabel(
"sentenceNumber", curationViewItem.getSentenceNumber().toString(), click);
item.add(sentenceNumber);
}
};
// add subcomponents to the component
sentenceList.setOutputMarkupId(true);
sentencesListView.add(sentenceList);
}