@Override
public void setCWMDocument(String path) {
try {
// Create a fresh unaltered document from the path
// which resembles the content saved inside
// the CWM XML file
cwmDocument = new CWMDocument(path);
document = cwmDocument.getDocument();
// XMLOutputter outputter = new
// XMLOutputter(Format.getPrettyFormat());
// ByteArrayOutputStream bout = new ByteArrayOutputStream();
// try {
// outputter.output(document.getRootElement(), bout);
// bout.write("\n".getBytes());
// log.trace(bout.toString());
// } catch (IOException e) {
// e.printStackTrace();
// }
// This looses namespaces
// document = cwmDocument.getOriginal();
// Document is altered severly once loaded into the
// editor so cwmDocument.getDocument() gives you a
// completely different CWMDocument than what has
// been read from file
// document = cwmDocument.getDocument();
} catch (JDOMException e) {
log.error(e.getMessage(), e);
} catch (IOException e) {
log.error(e.getMessage(), e);
}
}
@Override
public void setCWMDocument(CWMDocument cwmDocument) {
this.document = cwmDocument.getDocument();
this.cwmDocument = cwmDocument;
// XMLOutputter outputter = new XMLOutputter(Format.getPrettyFormat());
// ByteArrayOutputStream bout = new ByteArrayOutputStream();
// try {
// outputter.output(cwmDocument.getDocument().getRootElement(), bout);
// bout.write("\n".getBytes());
// log.trace(bout.toString());
// } catch (IOException e) {
// e.printStackTrace();
// }
// To set the document directly is a mistake as the
// document is altered via the editor from it´s
// original state once it is loaded into the editor
// this.cwmDocument = cwmDocument;
// This looses namespaces
// Requesting the original document is also a mistake
// as the original document is also altered once loaded
// document = cwmDocument.getOriginal();
}
private void searchForSemanticAnnotations(
List<SemanticAnnotationImpl> list,
Element element,
String path,
String parentNamespaceURI,
String schema,
HashMap<String, String> namespaceNames,
HashMap<String, HashMap<String, Integer>> namespaceCounts) {
KeyValuePair<String, String> namespaceNamePair = new KeyValuePair();
KeyValuePair<String, Integer> indexPair = new KeyValuePair();
// In java references are copied and passed by value! Integer objects
// do not have a setter. This means a Integer object cannot be used
// to simulate call by ref semantics. A KeyValuePair class has been
// introduced for that purpose. It has a setter method.
estimateNamespaceAndIndex(
element, indexPair, namespaceNamePair, parentNamespaceURI, namespaceCounts, namespaceNames);
// update XPath
String selfPath;
if (null == path) {
if ((null != namespaceNamePair.getValue()) && (0 != namespaceNamePair.getValue().length())) {
selfPath =
"/descendant::"
+ namespaceNamePair.getValue()
+ ":"
+ element.getName()
+ "["
+ indexPair.getValue()
+ "]";
} else {
selfPath = "/descendant::" + element.getName() + "[" + indexPair.getValue() + "]";
}
} else {
if ((null != namespaceNamePair.getValue()) && (0 != namespaceNamePair.getValue().length())) {
selfPath =
path
+ "/descendant::"
+ namespaceNamePair.getValue()
+ ":"
+ element.getName()
+ "["
+ indexPair.getValue()
+ "]";
} else {
selfPath = path + "/descendant::" + element.getName() + "[" + indexPair.getValue() + "]";
}
}
// search for semantic annotation among the attributes
for (Object o : element.getAttributes()) {
Attribute att = (Attribute) o;
// TODO: this is dependent on attribute order! If the value
// attribute
// precedes it´s tag attribute, this wont work any more!
// process modelReference which is stored as attribute combination
// of a tag and a value attribute inside a CWM:TaggedValue
// XML element
if ((att.getName().equalsIgnoreCase("tag"))
&& att.getValue().equalsIgnoreCase("modelReference")) {
readingModelReference = true;
}
if (att.getName().equalsIgnoreCase("value") && readingModelReference) {
modelReference = att.getValue();
readingModelReference = false;
}
// liftingSchemaMapping
if ((att.getName().equalsIgnoreCase("tag"))
&& att.getValue().equalsIgnoreCase("liftingSchemaMapping")) {
readingLiftingSchemaMapping = true;
}
if (att.getName().equalsIgnoreCase("value") && readingLiftingSchemaMapping) {
liftingSchemaMapping = att.getValue();
readingLiftingSchemaMapping = false;
}
// loweringSchemaMapping
if ((att.getName().equalsIgnoreCase("tag"))
&& att.getValue().equalsIgnoreCase("loweringSchemaMapping")) {
readingLoweringSchemaMapping = true;
}
if (att.getName().equalsIgnoreCase("value") && readingLoweringSchemaMapping) {
loweringSchemaMapping = att.getValue();
readingLoweringSchemaMapping = false;
}
}
if (null == modelType) {
modelType = "";
}
if (null == schemaType) {
schemaType = "";
}
// if the recursion runs into the scope of a new schema,
// store the schema name so that it can be put into the
// annotations created by this method
String localSchema = null;
if (null != schema) {
localSchema = new String(schema);
}
// log.trace(element.getName());
if (element.getName().toLowerCase().contains("Schema".toLowerCase())) {
localSchema = element.getAttributeValue("name");
} else if (element.getName().toLowerCase().contains("Stereotype".toLowerCase())) {
String nameAttributeValue = element.getAttributeValue("name");
if ("OWL".equalsIgnoreCase(nameAttributeValue)) {
modelType = "OWL";
} else if ("WSML".equalsIgnoreCase(nameAttributeValue)) {
modelType = "WSML";
}
} else if (element.getName().toLowerCase().contains("Table".toLowerCase())) {
// must be field of class as this step of the recursion does
// not create the annotation object and hence any local variables
// get lost
this.schemaType = "Table";
this.tableName = element.getAttributeValue("name");
} else if (element.getName().toLowerCase().contains("Column".toLowerCase())) {
this.schemaType = "Column";
this.columnName = element.getAttributeValue("name");
}
List elementList = element.getContent(DWHSemanticAnnotationFactoryImpl.filter);
// this mappings stores how many elements already belong to
// a specific namespace inside this parent element
// pass a copy to all sub elements but
// leave the parameters unchanged for subsequent siblings,
// so this mapping has to be cloned.
HashMap<String, HashMap<String, Integer>> localNamespaceCounts =
new HashMap<String, HashMap<String, Integer>>();
if (null != namespaceNames) {
// set all counts to zero
for (Map.Entry<String, String> entry : namespaceNames.entrySet()) {
localNamespaceCounts.put(entry.getKey(), null);
}
}
if ((null != elementList) && (0 != elementList.size())) {
for (Object o : elementList) {
searchForSemanticAnnotations(
list,
((Element) o),
selfPath,
namespaceNamePair.getValue(),
localSchema,
namespaceNames,
localNamespaceCounts);
}
}
if (element.getName().equalsIgnoreCase("ModelElement.taggedValue")) {
// if modelReference is found, the method stores all information
// about the semantic annotation inside a annotation and puts
// that annotation in the list of found annotations
if ((null != modelReference)
|| (null != liftingSchemaMapping)
|| (null != loweringSchemaMapping)) {
CWMDocumentSemanticAnnotationImpl ann = new CWMDocumentSemanticAnnotationImpl();
// from SemanticAnnotation
ann.setSourceType("CWMDocument");
// conceptGroup has to be set by first phase of algorithm
ann.setModelRef(modelReference);
ann.setLiftingSchemaMapping(liftingSchemaMapping);
// Lowering Schema Mapping is ignored but stored anyways
ann.setLoweringSchemaMapping(loweringSchemaMapping);
ann.setModelType(this.modelType);
// store xpath to this annotation
ann.setXPath(selfPath);
ann.setNamespaceNames(namespaceNames);
ann.setDocument(document);
// from DWHSemanticAnnotation
ann.setAnnotationType(schemaType);
ann.setTableName(tableName);
if (!schemaType.equalsIgnoreCase("Table")) {
// if the annotation concerns a table, do not store
// a column name
ann.setColumnName(columnName);
}
ann.setSchema(localSchema);
// from CWMDocumentSemanticAnnotation
ann.setCWMDocument(cwmDocument);
ann.setCWMDocumentPath(cwmDocument.getPath());
list.add(ann);
}
modelReference = null;
liftingSchemaMapping = null;
loweringSchemaMapping = null;
}
}
