private void writeNode(RDFNode node) throws IOException {
Node n = node.asNode();
if (n.isURI()) {
write(" <uri>" + escape(n.getURI()) + "</uri>\n");
return;
}
if (n.isBlank()) {
write(" <id>" + escape(n.getBlankNodeId().toString()) + "</id>\n");
return;
}
if (!n.isLiteral()) {
throw new JenaException("Don't know how to serialize node " + n);
}
if (n.getLiteral().getDatatypeURI() != null) {
write(
" <typedLiteral datatype=\""
+ escape(n.getLiteral().getDatatypeURI())
+ "\">"
+ escape(n.getLiteral().getLexicalForm())
+ "</typedLiteral>\n");
return;
}
if (n.getLiteral().language() == null || "".equals(n.getLiteral().language())) {
write(" <plainLiteral>" + escape(n.getLiteral().getLexicalForm()) + "</plainLiteral>\n");
return;
}
write(
" <plainLiteral xml:lang=\""
+ n.getLiteral().language()
+ "\">"
+ escape(n.getLiteral().getLexicalForm())
+ "</plainLiteral>\n");
}
@Override
public NodeValue exec(NodeValue v) {
// http://www.w3.org/TR/xpath-functions/#casting
String s = null;
Node n = v.asNode();
if (n.isBlank()) throw new ExprEvalException("CastXSD: Can't cast blank nodes: " + v);
if (n.isURI()) {
if (castType.equals(XSDDatatype.XSDstring)) s = n.getURI();
else
throw new ExprEvalException(
"CastXSD: Can't cast node: " + v + " to " + castType.getURI());
} else if (n.isLiteral())
// What if there is a lang tag?
s = n.getLiteralLexicalForm();
else
throw new ExprEvalException(
"CastXSD: Can't cast node: " + v + "(not a literal, not URI to string)");
if (s == null && v.isString()) s = v.getString();
if (s == null)
throw new ExprEvalException("CastXSD: Can't cast: " + v + "(has no string appearance)");
// // Special case - non-normalised xsd:booleans use 0 and 1.
// if ( v.isBoolean() )
// {
// if ( s.equals("0") ) s = "false" ;
// if ( s.equals("1") ) s = "true" ;
// }
NodeValue r = cast(s, v, castType);
return r;
}
protected static String sparqlNodeUpdate(Node node, String varName) {
if (node.isBlank()) {
return "_:" + node.getBlankNodeLabel().replaceAll("\\W", "");
} else {
return sparqlNode(node, varName);
}
}
public static Node iri(Node nv, String baseIRI) {
if (nv.isURI()) return nv;
if (nv.isBlank()) {
// Skolemization of blank nodes to IRIs : Don't ask, just don't ask.
String x = nv.getBlankNodeLabel();
return Node.createURI("_:" + x);
}
if (nv.isLiteral() && nv.getLiteralDatatype() == null && nv.getLiteralLanguage().equals("")) {
// Plain literal
IRI iri = null;
String iriStr = nv.getLiteralLexicalForm();
// Level of checking?
if (baseIRI != null) {
IRI base = iriFactory.create(baseIRI);
iri = base.create(iriStr);
} else iri = iriFactory.create(iriStr);
if (!iri.isAbsolute()) throw new ExprEvalException("Relative IRI string: " + iriStr);
if (warningsForIRIs && iri.hasViolation(false)) {
String msg = "unknown violation from IRI library";
Iterator<Violation> iter = iri.violations(false);
if (iter.hasNext()) {
Violation viol = iter.next();
msg = viol.getShortMessage();
}
Log.warn(NodeFunctions.class, "Bad IRI: " + msg + ": " + iri);
}
return Node.createURI(iri.toString());
}
throw new ExprEvalException("Can't make an IRI from " + nv);
}
/** Encoding of a node so it can be reconstructed */
public static String serialize(Node n, String base, PrefixMap prefixMap) {
// See also Nodec.
// See also OutputLangUtils - merge and this is a buffering call.
if (n == null) return "<<null>>";
if (n.isBlank()) {
String str = n.getBlankNodeLabel();
// c.f. OutputLangUtils
if (onlySafeBNodeLabels) str = safeBNodeLabel(str);
return "_:" + str;
}
if (n.isLiteral()) return FmtUtils.stringForLiteral((Node_Literal) n, null);
if (n.isURI()) {
String uri = n.getURI();
return stringForURI(uri, base, prefixMap);
}
// Safe name?
if (n.isVariable()) return "?" + n.getName();
//
// if ( n.equals(Node.ANY) )
// return "ANY" ;
throw new TDBException("Failed to turn a node into a string: " + n);
// return null ;
}
public static String str(Node node) {
if (node.isLiteral()) return node.getLiteral().getLexicalForm();
if (node.isURI()) return node.getURI();
// if ( node.isBlank() ) return node.getBlankNodeId().getLabelString() ;
// if ( node.isBlank() ) return "" ;
if (node.isBlank()) NodeValue.raise(new ExprTypeException("Blank node: " + node));
NodeValue.raise(new ExprEvalException("Not a string: " + node));
return "[undef]";
}
private static boolean matchNode(Item node, Item item, Match details) {
if (isAny(item)) {
details.anyMatches++;
return true;
}
if (isAnyVar(item)) {
details.varMatches++;
return true;
}
if (node.isSymbol()) {
// TERM in the thing to be matched means something concrete will be there.
if (node.equals(TERM)) {
if (item.equals(TERM)) {
details.termMatches++;
return true;
}
// Does not match LITERAL, URI, BNODE and VAR/ANY were done above.
return false;
}
throw new ARQException("StatsMatcher: unexpected slot type: " + node);
}
if (!node.isNode()) return false;
Node n = node.getNode();
if (n.isConcrete()) {
if (item.isNode() && item.getNode().equals(n)) {
details.exactMatches++;
return true;
}
if (isAnyTerm(item)) {
details.termMatches++;
return true;
}
if (isAnyURI(item) && n.isURI()) {
details.termMatches++;
return true;
}
if (isAnyLiteral(item) && n.isLiteral()) {
details.termMatches++;
return true;
}
if (isAnyBNode(item) && n.isBlank()) {
details.termMatches++;
return true;
}
}
return false;
}
private Node walkTree(
Model model,
Dataset oldDataset,
Node node,
Node predicate,
Query query,
QuerySolution initialBinding,
Set<Node> reached) {
QuerySolutionMap localBinding = new QuerySolutionMap();
localBinding.addAll(initialBinding);
localBinding.add("arg1", model.asRDFNode(node));
Dataset dataset = new DatasetWithDifferentDefaultModel(model, oldDataset);
QueryExecution qexec = ARQFactory.get().createQueryExecution(query, dataset, localBinding);
ResultSet rs = qexec.execSelect();
try {
if (rs.hasNext()) {
List<String> resultVars = rs.getResultVars();
String varName = resultVars.get(0);
RDFNode resultNode = rs.next().get(varName);
if (resultNode != null) {
return resultNode.asNode();
}
}
} finally {
qexec.close();
}
// Recurse into parents
ExtendedIterator<Triple> it = createIterator(model.getGraph(), node, predicate);
try {
while (it.hasNext()) {
Node next = getNext(it.next());
if ((next.isBlank() || next.isURI()) && !reached.contains(next)) {
reached.add(next);
Node nextResult =
walkTree(model, oldDataset, next, predicate, query, initialBinding, reached);
if (nextResult != null) {
return nextResult;
}
}
}
} finally {
it.close();
}
return null;
}
public SPDXChecksum(Model spdxModel, Node checksumNode) throws InvalidSPDXAnalysisException {
this.model = spdxModel;
this.checksumNode = checksumNode;
if (checksumNode.isBlank()) {
checksumResource = model.createResource(checksumNode.getBlankNodeId());
} else if (checksumNode.isURI()) {
checksumResource = model.createResource(checksumNode.getURI());
} else {
throw (new InvalidSPDXAnalysisException("Checksum node can not be a literal"));
}
// Algorithm
Node p =
spdxModel
.getProperty(SpdxRdfConstants.SPDX_NAMESPACE, SpdxRdfConstants.PROP_CHECKSUM_ALGORITHM)
.asNode();
Triple m = Triple.createMatch(checksumNode, p, null);
ExtendedIterator<Triple> tripleIter = spdxModel.getGraph().find(m);
while (tripleIter.hasNext()) {
Triple t = tripleIter.next();
if (t.getObject().isLiteral()) {
// The following is for compatibility with rdf generated with older
// versions of the tool
this.algorithm = t.getObject().toString(false);
} else if (t.getObject().isURI()) {
this.algorithm = URI_TO_ALGORITHM.get(t.getObject().getURI());
if (this.algorithm == null) {
this.algorithm = "UNKNOWN";
}
} else {
throw (new InvalidSPDXAnalysisException(
"Invalid checksum algorithm - must be one of the defined algorithms supported by SPDX."));
}
}
// value
p =
spdxModel
.getProperty(SpdxRdfConstants.SPDX_NAMESPACE, SpdxRdfConstants.PROP_CHECKSUM_VALUE)
.asNode();
m = Triple.createMatch(checksumNode, p, null);
tripleIter = spdxModel.getGraph().find(m);
while (tripleIter.hasNext()) {
Triple t = tripleIter.next();
this.value = t.getObject().toString(false);
}
}
/**
* Gets NXRelations node instance given Jena node.
*
* @param jenaNodeInst
* @return NXRelations node instance
*/
private Node getNXRelationsNode(com.hp.hpl.jena.graph.Node jenaNodeInst) {
if (jenaNodeInst == null) {
return null;
}
Node nuxNode = null;
if (jenaNodeInst.isBlank()) {
AnonId anonId = jenaNodeInst.getBlankNodeId();
String id = anonId.getLabelString();
nuxNode = NodeFactory.createBlank(id);
} else if (jenaNodeInst.isLiteral()) {
LiteralLabel label = jenaNodeInst.getLiteral();
String value = label.getLexicalForm();
String type = jenaNodeInst.getLiteralDatatypeURI();
String language = jenaNodeInst.getLiteralLanguage();
if (type != "") {
nuxNode = NodeFactory.createTypedLiteral(value, type);
} else if (language != "") {
nuxNode = NodeFactory.createLiteral(value, language);
} else {
nuxNode = NodeFactory.createLiteral(value);
}
} else if (jenaNodeInst.isURI()) {
String uri = jenaNodeInst.getURI();
// try to find corresponding prefix
// TODO AT: maybe take namespaces from relation service?
for (Map.Entry<String, String> ns : namespaces.entrySet()) {
String base = ns.getValue();
if (uri.startsWith(base)) {
String localName = uri.substring(base.length());
nuxNode = NodeFactory.createQNameResource(base, localName);
break;
}
}
if (nuxNode == null) {
// default to resource
nuxNode = NodeFactory.createResource(uri);
}
} else {
throw new IllegalArgumentException(
"Cannot translate non concrete Jena node into NXRelations node");
}
return nuxNode;
}
/**
* Map a Jena graph node to a Mulgara value.
*
* @param x The Jena Node to convert.
* @param session A session to use for blank node persistence.
* @return A Mulgara Value.
* @throws URISyntaxException When creating a URIReference that refers to an invalid URI.
*/
static Value n2v(Node x, Session session) throws URISyntaxException {
if (x.isURI()) return new URIReferenceImpl(new URI(x.getURI()));
if (x.isLiteral()) {
// The return types are Mulgara LiteralImpl
if (x.getLiteralDatatypeURI() != null) {
return new LiteralImpl(x.getLiteralLexicalForm(), new URI(x.getLiteralDatatypeURI()));
}
if (x.getLiteralLanguage() != null) {
return new LiteralImpl(x.getLiteralLexicalForm(), x.getLiteralLanguage());
}
return new LiteralImpl(x.getLiteralLexicalForm());
}
if (x.isBlank()) {
// is this a previously encountered Jena-allocated node?
Value bn = nodesToValues.get(x);
if (bn != null) return bn;
// May be a Mulgara-allocated bNode (and so we we have seen before)
String blankLabel = x.getBlankNodeLabel();
if (blankLabel.startsWith(LABEL)) {
long id = Long.parseLong(blankLabel.substring(LABEL_LEN));
return new BlankNodeImpl(BlankNodeImpl.counterToNode(id));
}
// It's not - it's a Jena one.
if (skolemizedBlankNodes) {
String skol = bNodeScheme + x.getBlankNodeLabel();
return new URIReferenceImpl(new URI(skol));
}
// Not a Mulgara-allocated bNode. Create a new mapping.
BlankNodeImpl v = new BlankNodeImpl();
nodesToValues.put(x, v);
valuesToNodes.put(v.getNodeId(), x);
return v;
}
throw new RuntimeException("Can't convert from Jena node : " + x);
}
/*
* See http://www.w3.org/TR/rdf-sparql-query paragraph 11.4.3
*
* "(ISBLANK) Returns true if term is a blank node. Returns false otherwise."
*
* @see http://www.w3.org/TR/rdf-sparql-query
*/
private void convertIsBlank(E_IsBlank expr) {
logger.debug("convertIsBlank " + expr.toString());
expr.getArg().visit(this);
Expression arg = expression.pop();
if (arg instanceof AttributeExprEx) {
AttributeExprEx variable = (AttributeExprEx) arg;
NodeMaker nm = variable.getNodeMaker();
DetermineNodeType filter = new DetermineNodeType();
nm.describeSelf(filter);
expression.push(filter.isLimittedToBlankNodes() ? Expression.TRUE : Expression.FALSE);
} else if (arg instanceof ConstantEx) {
ConstantEx constant = (ConstantEx) arg;
Node node = constant.getNode();
expression.push(node.isBlank() ? Expression.TRUE : Expression.FALSE);
} else {
conversionFailed(expr);
}
}
private ResultSetRewindable convertToStrings(ResultSetRewindable resultsActual) {
List<Binding> bindings = new ArrayList<Binding>();
while (resultsActual.hasNext()) {
Binding b = resultsActual.nextBinding();
BindingMap b2 = BindingFactory.create();
for (String vn : resultsActual.getResultVars()) {
Var v = Var.alloc(vn);
Node n = b.get(v);
String s;
if (n == null) s = "";
else if (n.isBlank()) s = "_:" + n.getBlankNodeLabel();
else s = NodeFunctions.str(n);
b2.add(v, NodeFactory.createLiteral(s));
}
bindings.add(b2);
}
ResultSet rs =
new ResultSetStream(
resultsActual.getResultVars(), null, new QueryIterPlainWrapper(bindings.iterator()));
return ResultSetFactory.makeRewindable(rs);
}
protected static String sparqlNode(Node node, String varName) {
if (node == null || node.isVariable()) {
return varName;
} else if (node.isBlank()) {
return "<fake:blank>"; // or throw exception?
} else if (node.isURI()) {
StringBuffer uriBuff = new StringBuffer();
return uriBuff.append("<").append(node.getURI()).append(">").toString();
} else if (node.isLiteral()) {
StringBuffer literalBuff = new StringBuffer();
literalBuff.append("\"");
pyString(literalBuff, node.getLiteralLexicalForm());
literalBuff.append("\"");
if (node.getLiteralDatatypeURI() != null) {
literalBuff.append("^^<").append(node.getLiteralDatatypeURI()).append(">");
} else if (node.getLiteralLanguage() != null && node.getLiteralLanguage().length() > 0) {
literalBuff.append("@").append(node.getLiteralLanguage());
}
return literalBuff.toString();
} else {
return varName;
}
}
public static boolean isBlank(Node node) {
return node.isBlank();
}