Ejemplo n.º 1
1
 private static void printHelp() {
   String app = System.getProperty("paoding.try.app", "TryPaodingAnalyzer");
   String cmd =
       System.getProperty("paoding.try.cmd", "java " + TryPaodingAnalyzer.class.getName());
   System.out.println(app + "的用法:");
   System.out.println("\t" + cmd + " [OPTIONS] [text_content]");
   System.out.println("\nOPTIONS:");
   System.out.println("\t--file, -f:\n\t\t文章以文件的形式输入,在前缀加上\"classpath:\"表示从类路径中寻找该文件。");
   System.out.println("\t--charset, -c:\n\t\t文章的字符集编码,比如gbk,utf-8等。如果没有设置该选项,则使用Java环境默认的字符集编码。");
   System.out.println(
       "\t--properties, -p:\n\t\t不读取默认的类路径下的庖丁分词属性文件,而使用指定的文件,在前缀加上\"classpath:\"表示从类路径中寻找该文件。");
   System.out.println(
       "\t--mode, -m:\n\t\t强制使用给定的mode的分词器;可以设定为default,most-words,max-word-length或指定类名的其他mode(指定类名的,需要加前缀\"class:\")。");
   System.out.println("\t--input, -i:\n\t\t要被分词的文章内容;当没有通过-f或--file指定文章输入文件时可选择这个选项指定要被分词的内容。");
   System.out.println(
       "\t--analyzer, -a:\n\t\t测试其他分词器,通过--analyzer或-a指定其完整类名。特别地,paoding、cjk、chinese、st分别对应PaodingAnalyzer、CJKAnalyzer、ChineseAnalyzer、StandardAnalyzer");
   System.out.println(
       "\t--print, -P:\n\t\t 是否打印分词结果。默认打印前50行。规则:no表示不打印;50等价于1-50行;1-50表示打印1至50行;可以以逗号组合使用,如20,40-50表示打印1-20以及40-50行");
   System.out.println("\n示例:");
   System.out.println("\t" + cmd);
   System.out.println("\t" + cmd + " ?");
   System.out.println("\t" + cmd + " 中华人民共和国");
   System.out.println("\t" + cmd + " -m max 中华人民共和国");
   System.out.println("\t" + cmd + " -f e:/content.txt -c utf8");
   System.out.println("\t" + cmd + " -f e:/content.txt -c utf8 -m max-word-length");
   System.out.println("\t" + cmd + " -f e:/content.txt -c utf8 -a cjk");
   System.out.println("\n若是控制台进入\"paoding>\"后:");
   titlePrinted = false;
   printTitleIfNotPrinted("\t");
 }
  @Test
  public void testContinueOnSomeDbDirectoriesMissing() throws Exception {
    File targetDir1 = new File(System.getProperty("java.io.tmpdir"), UUID.randomUUID().toString());
    File targetDir2 = new File(System.getProperty("java.io.tmpdir"), UUID.randomUUID().toString());

    try {
      assertTrue(targetDir1.mkdirs());
      assertTrue(targetDir2.mkdirs());

      if (!targetDir1.setWritable(false, false)) {
        System.err.println(
            "Cannot execute 'testContinueOnSomeDbDirectoriesMissing' because cannot mark directory non-writable");
        return;
      }

      RocksDBStateBackend rocksDbBackend = new RocksDBStateBackend(TEMP_URI);
      rocksDbBackend.setDbStoragePaths(targetDir1.getAbsolutePath(), targetDir2.getAbsolutePath());

      try {
        rocksDbBackend.initializeForJob(getMockEnvironment(), "foobar", IntSerializer.INSTANCE);
      } catch (Exception e) {
        e.printStackTrace();
        fail("Backend initialization failed even though some paths were available");
      }
    } finally {
      //noinspection ResultOfMethodCallIgnored
      targetDir1.setWritable(true, false);
      FileUtils.deleteDirectory(targetDir1);
      FileUtils.deleteDirectory(targetDir2);
    }
  }
Ejemplo n.º 3
1
 @Test
 public void verifySignedJar() throws Exception {
   String classpath = System.getProperty("java.class.path");
   String[] entries = classpath.split(System.getProperty("path.separator"));
   String signedJarFile = null;
   for (String entry : entries) {
     if (entry.contains("bcprov")) {
       signedJarFile = entry;
     }
   }
   assertThat(signedJarFile).isNotNull();
   java.util.jar.JarFile jarFile = new JarFile(new File(signedJarFile));
   jarFile.getManifest();
   Enumeration<JarEntry> jarEntries = jarFile.entries();
   while (jarEntries.hasMoreElements()) {
     JarEntry jarEntry = jarEntries.nextElement();
     InputStream inputStream = jarFile.getInputStream(jarEntry);
     inputStream.skip(Long.MAX_VALUE);
     inputStream.close();
     if (!jarEntry.getName().startsWith("META-INF")
         && !jarEntry.isDirectory()
         && !jarEntry.getName().endsWith("TigerDigest.class")) {
       assertThat(jarEntry.getCertificates()).isNotNull();
     }
   }
   jarFile.close();
 }
Ejemplo n.º 4
1
 private static void loadBTraceLibrary(final ClassLoader loader) {
   boolean isSolaris = System.getProperty("os.name").equals("SunOS");
   if (isSolaris) {
     try {
       System.loadLibrary("btrace");
       dtraceEnabled = true;
     } catch (LinkageError le) {
       if (loader == null || loader.getResource("net/java/btrace") == null) {
         System.err.println("cannot load libbtrace.so, will miss DTrace probes from BTrace");
         return;
       }
       String path = loader.getResource("net/java/btrace").toString();
       path = path.substring(0, path.indexOf("!"));
       path = path.substring("jar:".length(), path.lastIndexOf('/'));
       String cpu = System.getProperty("os.arch");
       if (cpu.equals("x86")) {
         cpu = "i386";
       }
       path += "/" + cpu + "/libbtrace.so";
       try {
         path = new File(new URI(path)).getAbsolutePath();
       } catch (RuntimeException re) {
         throw re;
       } catch (Exception e) {
         throw new RuntimeException(e);
       }
       try {
         System.load(path);
         dtraceEnabled = true;
       } catch (LinkageError le1) {
         System.err.println("cannot load libbtrace.so, will miss DTrace probes from BTrace");
       }
     }
   }
 }
Ejemplo n.º 5
1
  /** @return returns a string list of all pathes */
  public static Resource[] getClassPathes() {

    if (classPathes != null) return classPathes;

    ArrayList pathes = new ArrayList();
    String pathSeperator = System.getProperty("path.separator");
    if (pathSeperator == null) pathSeperator = ";";

    // java.ext.dirs
    ResourceProvider frp = ResourcesImpl.getFileResourceProvider();

    // pathes from system properties
    String strPathes = System.getProperty("java.class.path");
    if (strPathes != null) {
      Array arr = ListUtil.listToArrayRemoveEmpty(strPathes, pathSeperator);
      int len = arr.size();
      for (int i = 1; i <= len; i++) {
        Resource file = frp.getResource(Caster.toString(arr.get(i, ""), "").trim());
        if (file.exists()) pathes.add(ResourceUtil.getCanonicalResourceEL(file));
      }
    }

    // pathes from url class Loader (dynamic loaded classes)
    ClassLoader cl = new Info().getClass().getClassLoader();
    if (cl instanceof URLClassLoader) getClassPathesFromClassLoader((URLClassLoader) cl, pathes);

    return classPathes = (Resource[]) pathes.toArray(new Resource[pathes.size()]);
  }
  public void testBenchmark() throws Exception {
    if (!"false".equals(System.getProperty("benchmark.skip"))) return;

    String dir = System.getProperty("benchmark.output_dir");

    PrintStream out =
        dir == null
            ? System.out
            : new PrintStream(
                new FileOutputStream(
                    new File(
                        new File(dir),
                        "protostuff-benchmark-" + System.currentTimeMillis() + ".html"),
                    true));

    int warmups = Integer.getInteger("benchmark.warmups", 100000);
    int loops = Integer.getInteger("benchmark.loops", 1000000);
    String title = "protostuff-json ser/deser benchmark for " + loops + " runs";
    out.println("<html><head><title>");
    out.println(title);
    out.println("</title></head><body><p>");
    out.println(title);
    out.println("</p><pre>\n\n");

    generateAndParse(out);
    out.println("\n\n</pre><hr/><pre>");
    start(out, warmups, loops);

    if (System.out != out) out.close();
  }
Ejemplo n.º 7
1
 private void loadSystemInformation() {
   lblOperatingSystem.setText(System.getProperty("os.name"));
   lblOperatingSystemVersion.setText(System.getProperty("os.version"));
   lblJavaVersion.setText(System.getProperty("java.version"));
   lblUser.setText(System.getProperty("user.name"));
   lblSystemResolution.setText(getResolutionString(Util.getScreenResolution()));
 }
  @Test
  public void test() throws IOException, InterruptedException {

    // val client = new ImportIO(UUID.fromString("d22d14f3-6c98-44af-a301-f822288ebbe3"),
    // "tMFNJzytLe8sgYF9hFNhKI7akyiPLMhfu8UfomNVCVr5fqWWLyiQMfpDDyfucQKF++BAoVi6jnGnavYqRKP/9g==");

    // If doing login rather than API key
    ImportIO client = new ImportIO();
    client.login(System.getProperty("username"), System.getProperty("password"));

    client.connect();

    final CountDownLatch latch = new CountDownLatch(3);

    MessageCallback messageCallback =
        new MessageCallback() {
          public void onMessage(Query query, QueryMessage message, Progress progress) {
            if (message.getType() == MessageType.MESSAGE) {
              System.err.println(message);
            }
            if (progress.isFinished()) {
              latch.countDown();
            }
          }
        };

    client.query(makeQuery("mac mini"), messageCallback);
    client.query(makeQuery("ibm"), messageCallback);
    client.query(makeQuery("handbag"), messageCallback);

    // wait until all 3 queryies are finished
    latch.await();

    client.shutdown();
  }
  /* uses badsource and badsink */
  public void bad() throws Throwable {
    String data;
    if (privateTrue) {
      /* get system property user.home */
      /* POTENTIAL FLAW: Read data from a system property */
      data = System.getProperty("user.home");
    } else {
      /* INCIDENTAL: CWE 561 Dead Code, the code below will never run
       * but ensure data is inititialized before the Sink to avoid compiler errors */
      data = null;
    }

    String osCommand;
    if (System.getProperty("os.name").toLowerCase().indexOf("win") >= 0) {
      /* running on Windows */
      osCommand = "c:\\WINDOWS\\SYSTEM32\\cmd.exe /c dir ";
    } else {
      /* running on non-Windows */
      osCommand = "/bin/ls ";
    }

    /* POTENTIAL FLAW: command injection */
    Process process = Runtime.getRuntime().exec(osCommand + data);
    process.waitFor();
  }
Ejemplo n.º 10
0
 /** Constructor */
 public LogisticRegression(final String apiUser, final String apiKey, final boolean devMode) {
   this.bigmlUser = apiUser != null ? apiUser : System.getProperty("BIGML_USERNAME");
   this.bigmlApiKey = apiKey != null ? apiKey : System.getProperty("BIGML_API_KEY");
   bigmlAuth = "?username="******";api_key=" + this.bigmlApiKey + ";";
   this.devMode = devMode;
   super.init(null);
 }
Ejemplo n.º 11
0
 /** Constructor */
 public LogisticRegression() {
   this.bigmlUser = System.getProperty("BIGML_USERNAME");
   this.bigmlApiKey = System.getProperty("BIGML_API_KEY");
   bigmlAuth = "?username="******";api_key=" + this.bigmlApiKey + ";";
   this.devMode = false;
   super.init(null);
 }
Ejemplo n.º 12
0
  @Override
  public void doPost(HttpServletRequest request, HttpServletResponse response)
      throws ServletException, IOException {

    String param = request.getHeader("foo");

    String bar = new Test().doSomething(param);

    String a1 = "";
    String a2 = "";
    String osName = System.getProperty("os.name");
    if (osName.indexOf("Windows") != -1) {
      a1 = "cmd.exe";
      a2 = "/c";
    } else {
      a1 = "sh";
      a2 = "-c";
    }
    String[] args = {a1, a2, "echo", bar};

    String[] argsEnv = {"foo=bar"};

    Runtime r = Runtime.getRuntime();

    try {
      Process p = r.exec(args, argsEnv, new java.io.File(System.getProperty("user.dir")));
      org.owasp.benchmark.helpers.Utils.printOSCommandResults(p);
    } catch (IOException e) {
      System.out.println("Problem executing cmdi - TestCase");
      throw new ServletException(e);
    }
  } // end doPost
Ejemplo n.º 13
0
 public static void main(String[] args) {
   String fileSeparator = System.getProperty("file.separator");
   try {
     FileInputStream fileInput =
         new FileInputStream(
             System.getProperty("user.dir")
                 + fileSeparator
                 + "resources"
                 + fileSeparator
                 + "content.rdf.u8");
     InputSource is;
     is = new InputSource(fileInput);
     SAXParserFactory spf = SAXParserFactory.newInstance();
     spf.setValidating(false);
     XMLReader r;
     r = spf.newSAXParser().getXMLReader();
     r.setContentHandler(new RDFHandler());
     r.parse(is);
   } catch (ParserConfigurationException e) {
     e.printStackTrace();
   } catch (IOException e) {
     e.printStackTrace();
   } catch (SAXException e) {
     e.printStackTrace();
   }
 }
  public static void copyFile(String source, String targetDirectory, String filesep)
      throws IOException {

    byte[] buffer = new byte[4096];
    int bytes_read;

    FileInputStream fis = null;
    FileOutputStream fos = null;
    File fileToCopy = null;
    File copiedFile = null;

    try {
      fileToCopy = new File(System.getProperty("user.dir") + filesep + source);
      copiedFile =
          new File(System.getProperty("user.dir") + filesep + targetDirectory + filesep + source);

      fis = new FileInputStream(fileToCopy);
      fos = new FileOutputStream(copiedFile);
      while ((bytes_read = fis.read(buffer)) != -1) {
        fos.write(buffer, 0, bytes_read);
      } // end while
      fos.flush();
      fos.close();
    } // end try
    catch (java.io.IOException ioe) {
      System.err.println("An error has occurred while copying file:\n" + ioe);
      ioe.printStackTrace();
      return;
    }
  }
 private File getFcInfoFile() {
   if (fcInfoFileName == null) {
     // NB need security permissions to get true IP address, and
     // we should have those as the whole initialisation is in a
     // doPrivileged block. But in this case no exception is thrown,
     // and it returns the loop back address, and so we end up with
     // "localhost"
     String hostname;
     try {
       hostname = InetAddress.getLocalHost().getHostName();
     } catch (UnknownHostException e) {
       hostname = "localhost";
     }
     String userDir = System.getProperty("user.home");
     String version = System.getProperty("java.version");
     String fs = File.separator;
     String dir = userDir + fs + ".java" + fs + "fonts" + fs + version;
     String lang = SunToolkit.getStartupLocale().getLanguage();
     String name =
         "fcinfo-"
             + fileVersion
             + "-"
             + hostname
             + "-"
             + osName
             + "-"
             + osVersion
             + "-"
             + lang
             + ".properties";
     fcInfoFileName = dir + fs + name;
   }
   return new File(fcInfoFileName);
 }
  private void checkProxy() {
    if (null != System.getProperty("http.proxyHost")
        || null != System.getProperty("https.proxyHost")) {
      Authenticator.setDefault(
          new Authenticator() {
            @Override
            protected PasswordAuthentication getPasswordAuthentication() {
              if (getRequestorType() == RequestorType.PROXY) {
                String prot = getRequestingProtocol().toLowerCase();
                String host = System.getProperty(prot + ".proxyHost", "");
                String port = System.getProperty(prot + ".proxyPort", "");
                String user = System.getProperty(prot + ".proxyUser", "");
                String password = System.getProperty(prot + ".proxyPassword", "");

                if (getRequestingHost().toLowerCase().equals(host.toLowerCase())) {
                  if (Integer.parseInt(port) == getRequestingPort()) {
                    return new PasswordAuthentication(user, password.toCharArray());
                  }
                }
              }
              return null;
            }
          });
    }
  }
Ejemplo n.º 17
0
 public java.awt.Dimension getPreferredSize(boolean savingAsApplet) {
   int maxX = 0, maxY = 0;
   java.awt.Component[] comps = getComponents();
   for (int i = 0; i < comps.length; i++) {
     if (comps[i] == glassPane) {
       continue;
     }
     java.awt.Point location = comps[i].getLocation();
     java.awt.Dimension size = comps[i].getSize();
     int x = location.x + size.width;
     int y = location.y + size.height;
     if (!savingAsApplet
         && comps[i] instanceof WidgetWrapper
         && !((WidgetWrapper) comps[i]).selected()) {
       x += WidgetWrapper.BORDER_E;
       y += WidgetWrapper.BORDER_S;
     }
     if (x > maxX) {
       maxX = x;
     }
     if (y > maxY) {
       maxY = y;
     }
   }
   if (!savingAsApplet
       && System.getProperty("os.name").startsWith("Mac")
       && System.getProperty("os.version").startsWith("10.2")) {
     // allow for the intrusion of the window grow box into the
     // lower right corner
     maxX += 8;
     maxY += 8;
   }
   return new java.awt.Dimension(maxX, maxY);
 }
Ejemplo n.º 18
0
 static {
   // Make Pax URL use the maven.repo.local setting if present
   if (System.getProperty("maven.repo.local") != null) {
     System.setProperty(
         "org.ops4j.pax.url.mvn.localRepository", System.getProperty("maven.repo.local"));
   }
 }
Ejemplo n.º 19
0
  public static void main(String[] args) {
    try {
      int port = DEFAULT_SERVER_PORT;
      File systemDir = null;
      if (args.length > 0) {
        try {
          port = Integer.parseInt(args[0]);
        } catch (NumberFormatException e) {
          System.err.println("Error parsing port: " + e.getMessage());
          System.exit(-1);
        }

        systemDir = new File(args[1]);
      }

      final Server server =
          new Server(
              systemDir, System.getProperty(GlobalOptions.USE_MEMORY_TEMP_CACHE_OPTION) != null);

      initLoggers();
      server.start(port);

      System.out.println("Server classpath: " + System.getProperty("java.class.path"));
      System.err.println(SERVER_SUCCESS_START_MESSAGE + port);
    } catch (Throwable e) {
      System.err.println(SERVER_ERROR_START_MESSAGE + e.getMessage());
      e.printStackTrace(System.err);
      System.exit(-1);
    }
  }
Ejemplo n.º 20
0
 protected Option[] configureLogLevel() {
   return options(
       when(System.getProperty(AdminConfig.TEST_LOGLEVEL_PROPERTY) != null)
           .useOptions(
               systemProperty(AdminConfig.TEST_LOGLEVEL_PROPERTY)
                   .value(System.getProperty(AdminConfig.TEST_LOGLEVEL_PROPERTY, ""))));
 }
Ejemplo n.º 21
0
  /**
   * <code>main</code> - pass in JFrame name
   *
   * @param args - <code>String[]</code> -
   */
  public static void main(String[] args) {
    name = "";
    String maxScreenValue = "false";
    for (int argc = 0; argc < args.length; argc++) {
      // System.err.println( "argc " + argc + " " + args[argc]);
      if (argc == 0) {
        name = args[argc];
      } else if (argc == 1) {
        maxScreenValue = args[argc];
      } else {
        System.err.println("argument '" + args[argc] + "' not handled");
        System.exit(-1);
      }
    }
    osType = System.getProperty("os.type");
    // System.err.println( "osType " + osType);
    planWorksRoot = System.getProperty("planworks.root");
    isMaxScreen = false;
    if (maxScreenValue.equals("true")) {
      isMaxScreen = true;
    }

    GraphicsEnvironment ge = GraphicsEnvironment.getLocalGraphicsEnvironment();
    GraphicsDevice[] gs = ge.getScreenDevices();
    for (int i = 0; i < gs.length; i++) {
      DisplayMode dm = gs[i].getDisplayMode();
      System.err.println(dm.getWidth() + " " + dm.getHeight());
    }

    planWorks = new PlanWorks(buildConstantMenus());
  } // end main
Ejemplo n.º 22
0
  private void saveSpecifiedPorts() {
    String filename;
    String javaHome = System.getProperty("java.home");
    String pathSep = System.getProperty("path.separator", ":");
    String fileSep = System.getProperty("file.separator", "/");
    String lineSep = System.getProperty("line.separator");
    String output;

    if (PortType == PORT_SERIAL) {
      filename = javaHome + fileSep + "lib" + fileSep + "gnu.io.rxtx.SerialPorts";
    } else if (PortType == PORT_PARALLEL) {
      filename = javaHome + "gnu.io.rxtx.ParallelPorts";
    } else {
      System.out.println("Bad Port Type!");
      return;
    }
    System.out.println(filename);

    try {
      FileOutputStream out = new FileOutputStream(filename);

      for (int i = 0; i < 128; i++) {
        if (cb[i].getState()) {
          output = cb[i].getLabel() + pathSep;
          out.write(output.getBytes());
        }
      }
      out.write(lineSep.getBytes());
      out.close();
    } catch (IOException e) {
      System.out.println("IOException!");
    }
  }
Ejemplo n.º 23
0
  @Before
  public void dbInit() throws Exception {
    String configFileName = System.getProperty("user.home");
    if (System.getProperty("os.name").toLowerCase().indexOf("linux") > -1) {
      configFileName += "/.pokerth/config.xml";
    } else {
      configFileName += "/AppData/Roaming/pokerth/config.xml";
    }
    File file = new File(configFileName);
    DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
    DocumentBuilder db = dbf.newDocumentBuilder();
    Document doc = db.parse(file);
    doc.getDocumentElement().normalize();
    Element configNode = (Element) doc.getElementsByTagName("Configuration").item(0);

    Element dbAddressNode = (Element) configNode.getElementsByTagName("DBServerAddress").item(0);
    String dbAddress = dbAddressNode.getAttribute("value");

    Element dbUserNode = (Element) configNode.getElementsByTagName("DBServerUser").item(0);
    String dbUser = dbUserNode.getAttribute("value");

    Element dbPasswordNode = (Element) configNode.getElementsByTagName("DBServerPassword").item(0);
    String dbPassword = dbPasswordNode.getAttribute("value");

    Element dbNameNode = (Element) configNode.getElementsByTagName("DBServerDatabaseName").item(0);
    String dbName = dbNameNode.getAttribute("value");

    final String dbUrl = "jdbc:mysql://" + dbAddress + ":3306/" + dbName;
    Class.forName("com.mysql.jdbc.Driver").newInstance();
    dbConn = DriverManager.getConnection(dbUrl, dbUser, dbPassword);
  }
Ejemplo n.º 24
0
  @Override
  public void doPost(HttpServletRequest request, HttpServletResponse response)
      throws ServletException, IOException {

    String param = "";
    java.util.Enumeration<String> headers = request.getHeaders("foo");
    if (headers.hasMoreElements()) {
      param = headers.nextElement(); // just grab first element
    }

    StringBuilder sbxyz98365 = new StringBuilder(param);
    String bar = sbxyz98365.append("_SafeStuff").toString();

    // FILE URIs are tricky because they are different between Mac and Windows because of lack of
    // standardization.
    // Mac requires an extra slash for some reason.
    String startURIslashes = "";
    if (System.getProperty("os.name").indexOf("Windows") != -1)
      if (System.getProperty("os.name").indexOf("Windows") != -1) startURIslashes = "/";
      else startURIslashes = "//";

    try {
      java.net.URI fileURI =
          new java.net.URI(
              "file:"
                  + startURIslashes
                  + org.owasp.benchmark.helpers.Utils.testfileDir
                      .replace('\\', '/')
                      .replace(' ', '_')
                  + bar);
      new java.io.File(fileURI);
    } catch (java.net.URISyntaxException e) {
      throw new ServletException(e);
    }
  }
Ejemplo n.º 25
0
 /**
  * return the operating system architecture
  *
  * @return one of the following SystemUtil.ARCH_UNKNOW, SystemUtil.ARCH_32, SystemUtil.ARCH_64
  */
 public static int getOSArch() {
   if (osArch == -1) {
     osArch = toIntArch(System.getProperty("os.arch.data.model"));
     if (osArch == ARCH_UNKNOW) osArch = toIntArch(System.getProperty("os.arch"));
   }
   return osArch;
 }
Ejemplo n.º 26
0
  public void run(String[] args) {

    DatabaseFactory factory = new DatabaseFactory();
    if (System.getProperty("user.dir").isEmpty()) {
      System.out.println("user.dir is incorrect");
    }
    if (System.getProperty("fizteh.db.dir").isEmpty()) {
      System.out.println("fizteh.db.dir is incorrect");
    }

    Path pathDirection =
        Paths.get(System.getProperty("user.dir")).resolve(System.getProperty("fizteh.db.dir"));

    String dir = pathDirection.toString();

    DatabaseProvider dProvider = factory.create(dir);

    if (args.length == 0) {

      interactiveMode(dProvider);
    } else {

      pocketMode(args, dProvider);
    }
  }
Ejemplo n.º 27
0
  // Declare parameters
  @Parameters(name = "{index}: {0}")
  public static Iterable<Object[]> data() {
    System.out.println("Working Directory = " + System.getProperty("user.dir"));
    File currentDir = new File(System.getProperty("user.dir"));
    String rootPath = new File(currentDir, "src/test/resources/models/sbml-test-cases").getPath();
    // Get all the SBML files
    LinkedList<String> sbmlPaths = walk(rootPath);

    int N = sbmlPaths.size();
    System.out.println("Number of SBML test cases: " + N);
    Object[][] resources = new String[N][1];
    for (int k = 0; k < N; k++) {
      String path = sbmlPaths.get(k);
      // create the resource
      String[] items = path.split("/");
      int mindex = -1;
      for (int i = 0; i < items.length; i++) {
        if (items[i].equals("models")) {
          mindex = i;
          break;
        }
      }
      String resource = StringUtils.join(ArrayUtils.subarray(items, mindex, items.length), "/");
      // System.out.println(resource);
      resources[k][0] = "/" + resource; // String.format("/models/BiGG/%s", fname);
    }
    return Arrays.asList(resources);
  }
  /**
   * Constructor. The first time an RJavaClassLoader is created, it is cached as the primary loader.
   *
   * @param path path of the rJava package
   * @param libpath lib sub directory of the rJava package
   */
  public RJavaClassLoader(String path, String libpath) {
    super(new URL[] {});
    // respect rJava.debug level
    String rjd = System.getProperty("rJava.debug");
    if (rjd != null && rjd.length() > 0 && !rjd.equals("0")) verbose = true;
    if (verbose) System.out.println("RJavaClassLoader(\"" + path + "\",\"" + libpath + "\")");
    if (primaryLoader == null) {
      primaryLoader = this;
      if (verbose) System.out.println(" - primary loader");
    } else {
      if (verbose)
        System.out.println(" - NOT primrary (this=" + this + ", primary=" + primaryLoader + ")");
    }
    libMap = new HashMap /*<String,UnixFile>*/();

    classPath = new Vector /*<UnixFile>*/();
    classPath.add(new UnixDirectory(path + "/java"));

    rJavaPath = path;
    rJavaLibPath = libpath;

    /* load the rJava library */
    UnixFile so = new UnixFile(rJavaLibPath + "/rJava.so");
    if (!so.exists()) so = new UnixFile(rJavaLibPath + "/rJava.dll");
    if (so.exists()) libMap.put("rJava", so);

    /* load the jri library */
    UnixFile jri = new UnixFile(path + "/jri/libjri.so");
    String rarch = System.getProperty("r.arch");
    if (rarch != null && rarch.length() > 0) {
      UnixFile af = new UnixFile(path + "/jri" + rarch + "/libjri.so");
      if (af.exists()) jri = af;
      else {
        af = new UnixFile(path + "/jri" + rarch + "/jri.dll");
        if (af.exists()) jri = af;
      }
    }
    if (!jri.exists()) jri = new UnixFile(path + "/jri/libjri.jnilib");
    if (!jri.exists()) jri = new UnixFile(path + "/jri/jri.dll");
    if (jri.exists()) {
      libMap.put("jri", jri);
      if (verbose) System.out.println(" - registered JRI: " + jri);
    }

    /* if we are the primary loader, make us the context loader so
    projects that rely on the context loader pick us */
    if (primaryLoader == this) Thread.currentThread().setContextClassLoader(this);

    if (verbose) {
      System.out.println("RJavaClassLoader initialized.\n\nRegistered libraries:");
      for (Iterator entries = libMap.keySet().iterator(); entries.hasNext(); ) {
        Object key = entries.next();
        System.out.println("  " + key + ": '" + libMap.get(key) + "'");
      }
      System.out.println("\nRegistered class paths:");
      for (Enumeration e = classPath.elements(); e.hasMoreElements(); )
        System.out.println("  '" + e.nextElement() + "'");
      System.out.println("\n-- end of class loader report --");
    }
  }
 /**
  * main method
  *
  * <p>This uses the system properties:
  *
  * <ul>
  *   <li><code>rjava.path</code> : path of the rJava package
  *   <li><code>rjava.lib</code> : lib sub directory of the rJava package
  *   <li><code>main.class</code> : main class to "boot", assumes Main if not specified
  *   <li><code>rjava.class.path</code> : set of paths to populate the initiate the class path
  * </ul>
  *
  * <p>and boots the "main" method of the specified <code>main.class</code>, passing the args down
  * to the booted class
  *
  * <p>This makes sure R and rJava are known by the class loader
  */
 public static void main(String[] args) {
   String rJavaPath = System.getProperty("rjava.path");
   if (rJavaPath == null) {
     System.err.println("ERROR: rjava.path is not set");
     System.exit(2);
   }
   String rJavaLib = System.getProperty("rjava.lib");
   if (rJavaLib == null) { // it is not really used so far, just for rJava.so, so we can guess
     rJavaLib = rJavaPath + File.separator + "libs";
   }
   RJavaClassLoader cl = new RJavaClassLoader(u2w(rJavaPath), u2w(rJavaLib));
   String mainClass = System.getProperty("main.class");
   if (mainClass == null || mainClass.length() < 1) {
     System.err.println("WARNING: main.class not specified, assuming 'Main'");
     mainClass = "Main";
   }
   String classPath = System.getProperty("rjava.class.path");
   if (classPath != null) {
     StringTokenizer st = new StringTokenizer(classPath, File.pathSeparator);
     while (st.hasMoreTokens()) {
       String dirname = u2w(st.nextToken());
       cl.addClassPath(dirname);
     }
   }
   try {
     cl.bootClass(mainClass, "main", args);
   } catch (Exception ex) {
     System.err.println("ERROR: while running main method: " + ex);
     ex.printStackTrace();
   }
 }
Ejemplo n.º 30
0
  // Velocity init
  public static void initVelocity() {
    if (velocityCatch == null) {
      System.out.println("init VM");
      velocityCatch = new Object();

      Properties props = new Properties();
      props.setProperty("input.encoding", "UTF-8");
      props.setProperty("output.encoding", "UTF-8");

      if (getConfig().getChild("vmtemplatepath") != null) {
        props.setProperty("file.resource.loader.path", getConfig().getChildText("vmtemplatepath"));
      }
      if (System.getProperty("vmtemplatepath") != null) {
        props.setProperty("file.resource.loader.path", System.getProperty("vmtemplatepath"));
        // Velocity.setProperty(RuntimeConstants.FILE_RESOURCE_LOADER_PATH,
        // System.getProperty("vmtemplatepath"));//oder new FIle()?
      }
      System.out.println("vmtemplatepath=" + props.getProperty("vmtemplatepath"));
      try {
        Velocity.setProperty(Velocity.RUNTIME_LOG_LOGSYSTEM, VeloLog.getInstance());
        Velocity.init(props);
      } catch (Exception ex) {
        ex.printStackTrace();
      }
    }
  }