Ontology Based Profile Matching
This will eventually replace sim2 currently distributed as part of owltools
For now you must do this:
mvn javadoc:javadoc
And then open target/site/apidocs/index.html in a browser
To become more familiar with the code, please run the junit tests in eclipse.
Also try the performance/integration tests in owlsim.compute.matcher.perf - these will need extra files downloaded
see the Makefile for details.
To run the REST services:
mvn package
produces a standalone Dropwizard jar:
owlsim-services/target/owlsim-services-3.0-SNAPSHOT.jar
which runs with:
cd owlsim-services
java -jar target/owlsim-services-3.0-SNAPSHOT.jar server src/test/resources/test-configuration.yaml
where configuration.yaml describes the desired ontologies:
ontologyUris:
- owlsim-core/src/test/resources/species.owl
ontologyDataUris: []
and then browse the REST documentation.
If you prefer to run the REST services from your IDE launch:
org.monarchinitiative.owlsim.services.OwlSimServiceApplication as a main
class with server and an appropriate YAML configuration as arguments.