public void splitObjects() {
Object[] os = this.list.getSelectedValues();
if (os.length == 0) return;
Set<ObjectStructure> channels = new HashSet<ObjectStructure>();
for (Object o : os) {
if (split((Object3DGui) o)) channels.add(((Object3DGui) o).getChannel());
}
for (ObjectStructure o : channels) o.saveOutput();
saveOptions();
}
protected HashMap<Integer, ArrayList<Object3DGui>> getSplitSelection() {
System.out.println(
"get split selection: currenChannels==null?" + (this.currentChannels == null));
if (this.currentChannels == null) return new HashMap<Integer, ArrayList<Object3DGui>>(0);
HashMap<Integer, ArrayList<Object3DGui>> res =
new HashMap<Integer, ArrayList<Object3DGui>>(this.currentChannels.length);
for (ObjectStructure ass : currentChannels) res.put(ass.getIdx(), new ArrayList<Object3DGui>());
for (Object o : list.getSelectedValues()) {
Object3DGui o3D = (Object3DGui) (o);
int idx = o3D.getChannel().getIdx();
res.get(idx).add(o3D);
}
return res;
}
public void shift() {
boolean change = false;
for (ObjectStructure as : currentChannels) {
if (as instanceof Structure) {
boolean c = ((Structure) as).shiftObjectIndexes(true);
if (c) {
change = true;
Core.mongoConnector.removeStructureMeasurements(as.getId(), as.getIdx());
}
} else if (as instanceof Field) {
if (((Field) as).shiftObjectIndexes()) {
if (autoSave) as.saveOutput();
change = true;
}
}
}
if (change) {
this.populateObjects();
}
}
public void setSelectedObjectsFromDB() {
this.selectingObject = true;
this.list.clearSelection();
int offsetIdx = 0;
ArrayList<Integer> selectedIndices = new ArrayList<Integer>();
for (ObjectStructure s : this.currentChannels) {
BasicDBList selectedObjects =
Core.mongoConnector.getSelectedObjects(currentNucId, s.getIdx());
if (selectedObjects != null && !selectedObjects.isEmpty()) {
for (Object o : selectedObjects) selectedIndices.add((Integer) o + offsetIdx);
}
offsetIdx += s.getObjects().length;
}
if (!selectedIndices.isEmpty()) {
int[] selectedIdx = new int[selectedIndices.size()];
for (int i = 0; i < selectedIdx.length; i++) selectedIdx[i] = selectedIndices.get(i);
this.list.setSelectedIndices(selectedIdx);
}
this.selectingObject = false;
}
public void populateObjects() {
try {
this.listModel.removeAllElements();
if (currentChannels == null) {
return;
}
this.populatingObjects = true;
ArrayList<Integer> selection = null;
if (showSelection != null && showSelection.isSelected()) selection = new ArrayList<Integer>();
int currentIdx = 0;
for (ObjectStructure ass : currentChannels) {
Object3D[] os = ass.getObjects();
if (os != null) {
Object3DGui[] osg = new Object3DGui[os.length];
for (int i = 0; i < os.length; i++) osg[i] = new Object3DGui(os[i], ass);
if (layout instanceof ObjectManagerLayout
&& currentChannels.length == 1
&& !((ObjectManagerLayout) layout).getSortKey().equals("idx"))
this.sort(((ObjectManagerLayout) layout).getSortKey(), osg, ass.getIdx());
// System.out.println("populating objects.. nb objects:"+os.length);
for (Object3DGui o3D : osg) {
this.listModel.addElement(o3D);
if (selection != null && o3D.isInSelection()) selection.add(currentIdx);
currentIdx++;
}
// if (selection!=null) System.out.println("populating objects.. selection
// size:"+selection.size());
} // else System.out.println("no objects int channel:"+ass.getChannelName());
}
if (selection != null && !selection.isEmpty()) {
int[] sel = new int[selection.size()];
int i = 0;
for (int idx : selection) sel[i++] = idx;
list.setSelectedIndices(sel);
}
} catch (Exception e) {
exceptionPrinter.print(e, "", Core.GUIMode);
}
this.populatingObjects = false;
}
