public String getXMLString(FolderType folder) throws Exception {
StringWriter strWriter = new StringWriter();
try {
PatientSetJAXBUtil.getJAXBUtil().marshaller((Object) folder, strWriter);
} catch (JAXBUtilException e) {
log.error("Error marshalling Workplace folder");
throw new JAXBUtilException(e.getMessage(), e);
}
return strWriter.toString();
}
/**
* Function to build Ont Request message type and return it as an XML string
*
* @param GetChildrenType parentData (get children of this parent node)
* @return A String data type containing the Ont RequestMessage in XML format
*/
public String doBuildXML(GetReturnType returnData) {
String requestString = null;
try {
MessageHeaderType messageHeader = getMessageHeader();
RequestHeaderType reqHeader = getRequestHeader();
BodyType bodyType = getBodyType(returnData);
RequestMessageType reqMessageType = getRequestMessageType(messageHeader, reqHeader, bodyType);
requestString = getXMLString(reqMessageType);
} catch (JAXBUtilException e) {
log.error(e.getMessage());
}
return requestString;
}
public FoldersType doReadFolders() {
FoldersType folders = null;
try {
BodyType bodyType = respMessageType.getMessageBody();
JAXBUnWrapHelper helper = new JAXBUnWrapHelper();
if (bodyType != null)
folders = (FoldersType) helper.getObjectByClass(bodyType.getAny(), FoldersType.class);
} catch (JAXBUtilException e) {
log.error(e.getMessage());
;
}
return folders;
}
/**
* Function to build Ont Request message type and return it as an XML string
*
* @param ConfigureType parentData (get children of this parent node)
* @return A String data type containing the Ont RequestMessage in XML format
*/
public String doBuildXML(String password) {
String requestString = null;
try {
MessageHeaderType messageHeader = getMessageHeader();
messageHeader.setSecurity(securityType);
RequestHeaderType reqHeader = getRequestHeader();
BodyType bodyType = getBodyType(password);
RequestMessageType reqMessageType = getRequestMessageType(messageHeader, reqHeader, bodyType);
requestString = getXMLString(reqMessageType);
} catch (JAXBUtilException e) {
log.error(e.getMessage());
}
return requestString;
}
public I2B2RequestMessageHelper(String requestXml) throws I2B2Exception {
this.requestXml = requestXml;
unWrapHelper = new JAXBUnWrapHelper();
try {
jaxbElement = jaxbUtil.unMashallFromString(requestXml);
if (jaxbElement == null) {
throw new I2B2Exception("null value in after unmarshalling request string ");
}
requestMessageType = (RequestMessageType) jaxbElement.getValue();
} catch (JAXBUtilException jaxbUtilEx) {
log.error("Error processing request xml [" + requestXml + "]", jaxbUtilEx);
throw new I2B2Exception(jaxbUtilEx.getMessage());
}
}
/**
* Function to build PM Request message type and return it as an XML string
*
* @param GetUserConfigurationType (user config data)
* @return A String data type containing the PM RequestMessage in XML format
*/
public String doBuildXML(GetUserConfigurationType userConfig, MessageHeaderType header) {
String requestString = null;
try {
MessageHeaderType messageHeader = getMessageHeader();
messageHeader.setSecurity(header.getSecurity());
messageHeader.setProjectId(header.getProjectId());
RequestHeaderType reqHeader = getRequestHeader();
BodyType bodyType = getBodyType(userConfig);
RequestMessageType reqMessageType = getRequestMessageType(messageHeader, reqHeader, bodyType);
requestString = getXMLString(reqMessageType);
} catch (JAXBUtilException e) {
log.error(e.getMessage());
}
return requestString;
}
public StatusType processResult(String response) {
StatusType status = null;
try {
JAXBElement jaxbElement = PatientSetJAXBUtil.getJAXBUtil().unMashallFromString(response);
respMessageType = (ResponseMessageType) jaxbElement.getValue();
// Get response message status
ResponseHeaderType responseHeader = respMessageType.getResponseHeader();
status = responseHeader.getResultStatus().getStatus();
String procStatus = status.getType();
String procMessage = status.getValue();
if (procStatus.equals("ERROR")) {
log.error("Error reported by Workplace web Service " + procMessage);
} else if (procStatus.equals("WARNING")) {
log.error("Warning reported by Workplace web Service" + procMessage);
}
} catch (JAXBUtilException e) {
log.error(e.getMessage());
}
return status;
}
/** @see edu.harvard.i2b2.crc.delegate.RequestHandlerDelegate#handleRequest(java.lang.String) */
public String handleRequest(String requestXml, RequestHandler requestHandler)
throws I2B2Exception {
String response = null;
JAXBUtil jaxbUtil = CRCLoaderJAXBUtil.getJAXBUtil();
try {
JAXBElement jaxbElement = jaxbUtil.unMashallFromString(requestXml);
RequestMessageType requestMessageType = (RequestMessageType) jaxbElement.getValue();
BodyType bodyType = requestMessageType.getMessageBody();
if (bodyType == null) {
log.error("null value in body type");
throw new I2B2Exception("null value in body type");
}
// Call PM cell to validate user
StatusType procStatus = null;
ProjectType projectType = null;
String projectId = null;
SecurityType securityType = null;
try {
if (requestMessageType.getMessageHeader() != null) {
if (requestMessageType.getMessageHeader().getSecurity() != null) {
securityType = requestMessageType.getMessageHeader().getSecurity();
}
projectId = requestMessageType.getMessageHeader().getProjectId();
}
if (securityType == null) {
procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue("Request message missing user/password");
response =
I2B2MessageResponseFactory.buildResponseMessage(requestXml, procStatus, bodyType);
return response;
}
PMServiceDriver pmServiceDriver = new PMServiceDriver();
projectType = pmServiceDriver.checkValidUser(securityType, projectId);
if (projectType == null) {
procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue("Invalid user/password for the given domain");
response =
I2B2MessageResponseFactory.buildResponseMessage(requestXml, procStatus, bodyType);
return response;
}
log.debug("project name from PM " + projectType.getName());
log.debug("project id from PM " + projectType.getId());
if (projectType.getRole().get(0) != null) {
log.debug("Project role from PM " + projectType.getRole().get(0));
this.putRoles(
projectId,
securityType.getUsername(),
securityType.getDomain(),
projectType.getRole());
Node rootNode = CacheUtil.getCache().getRoot();
List<String> roles =
(List<String>)
rootNode.get(
securityType.getDomain()
+ "/"
+ projectId
+ "/"
+ securityType.getUsername());
if (roles != null) {
System.out.println("roles size !!1 " + roles.size());
}
} else {
log.warn("project role not set for user [" + securityType.getUsername() + "]");
}
} catch (AxisFault e) {
procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue("Could not connect to server");
response =
I2B2MessageResponseFactory.buildResponseMessage(requestXml, procStatus, bodyType);
return response;
} catch (I2B2Exception e) {
procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue("Message error connecting Project Management cell");
response =
I2B2MessageResponseFactory.buildResponseMessage(requestXml, procStatus, bodyType);
return response;
} catch (JAXBUtilException e) {
procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue("Message error from Project Management cell");
response =
I2B2MessageResponseFactory.buildResponseMessage(requestXml, procStatus, bodyType);
return response;
}
JAXBUnWrapHelper unWrapHelper = new JAXBUnWrapHelper();
BodyType responseBodyType = null;
if (requestHandler instanceof PublishDataRequestHandler) {
String irodsStorageResource = null;
for (ParamType paramType : projectType.getParam()) {
if (paramType.getName().equalsIgnoreCase("SRBDefaultStorageResource")) {
irodsStorageResource = paramType.getValue();
log.debug("param value for SRBDefaultStorageResource" + paramType.getValue());
}
}
((PublishDataRequestHandler) requestHandler)
.setIrodsDefaultStorageResource(irodsStorageResource);
}
responseBodyType = requestHandler.execute();
procStatus = new StatusType();
procStatus.setType("DONE");
procStatus.setValue("DONE");
response =
I2B2MessageResponseFactory.buildResponseMessage(
requestXml, procStatus, responseBodyType, true);
} catch (JAXBUtilException e) {
log.error("JAXBUtil exception", e);
StatusType procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue(requestXml + "\n\n" + StackTraceUtil.getStackTrace(e));
try {
response = I2B2MessageResponseFactory.buildResponseMessage(null, procStatus, null);
} catch (JAXBUtilException e1) {
e1.printStackTrace();
}
} catch (I2B2Exception e) {
log.error("I2B2Exception", e);
StatusType procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue(StackTraceUtil.getStackTrace(e));
try {
response = I2B2MessageResponseFactory.buildResponseMessage(requestXml, procStatus, null);
} catch (JAXBUtilException e1) {
e1.printStackTrace();
}
} catch (Throwable e) {
log.error("Throwable", e);
StatusType procStatus = new StatusType();
procStatus.setType("ERROR");
procStatus.setValue(StackTraceUtil.getStackTrace(e));
try {
response = I2B2MessageResponseFactory.buildResponseMessage(requestXml, procStatus, null);
} catch (JAXBUtilException e1) {
e1.printStackTrace();
}
}
return response;
}
